Project Completion QA Checklist: Drop-seq, DroNc-seq, Fluidigm C1 Comparison

HumanCellAtlas / data-operations

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Project Completion QA Checklist: Drop-seq, DroNc-seq, Fluidigm C1 Comparison #14

Open jychien opened 4 years ago

jychien commented 4 years ago

Project UUID: a9c022b4-c771-4468-b769-cabcf9738de3 Project Title: Comparison, calibration, and benchmarking of high-throughput single cell RNA-Seq techniques for unbiased cell-type classification Project Short Name: Drop-seq, DroNc-seq, Fluidigm C1 Comparison Submission UUID: bf3116e5-1af1-46c2-8bbd-44dac49d1e7f Environment: Production

[ ] Process QA of bundles
[ ] Metadata tsv validation: Run metadatatsv_validator.py

jychien commented 4 years ago

Process QA found the following issue:

There are 11 entities in the Cell line tab, only 9 are displayed in the browser as only these 9 have directly associated files. Similar issue found in HumanCellAtlas/data-operations/issues/9. However, all 11 cell lines have their input biomaterial listed under 'specimen_from_organism.biomaterial_core.biomaterial_id'. (Not sure what the contributors or users would want displayed)

jychien commented 4 years ago

This dataset has a time component to the experiment. Should evaluate if timecourse if applicable.