HuttleyLab DiverseSeq issues

HuttleyLab / DiverseSeq

Tools for analysis of sequence divergence

BSD 3-Clause "New" or "Revised" License

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MAINT: minor changes, code-cleanup, sprinking of documentation, fixes #17, fixes #18

#19 KatherineCaley closed 5 months ago
1
combine loader.py and writer.py into io.py module

#18 KatherineCaley closed 3 months ago
0
dvgt_write_prepped_seqs should take path, not datastore

#17 KatherineCaley closed 3 months ago
0
allow trimming length outliers from the sampling

#16 GavinHuttley opened 6 months ago
1
app pipelines to speed up divergent commands

#15 KatherineCaley closed 6 months ago
2
add DEV: change action yml to plugin branch

#14 KatherineCaley closed 6 months ago
0
DEV: convert code within prep and max into cogent3 apps

#13 KatherineCaley closed 6 months ago
6
10 dev support direct conversion from array to record

#12 KatherineCaley closed 6 months ago
0
DEV: enforce order of listing of click commands

#11 KatherineCaley closed 7 months ago
0
DEV: support direct conversion from array to record

#10 KatherineCaley closed 6 months ago
4
DEV: add preprocessing command, fixes #8

#9 KatherineCaley closed 7 months ago
2
ENH: add `preprocess` subcommand

#8 KatherineCaley closed 7 months ago
8
DEV: github actions for the test suite

#7 GavinHuttley closed 7 months ago
1
Expand README to more fully explain the method

#6 GavinHuttley opened 8 months ago
0
add support for using a list of reference taxa id

#5 GavinHuttley closed 2 months ago
1
decorator for performance optimisation

#4 GavinHuttley closed 10 months ago
2
design experiments on order sensitivity

#3 GavinHuttley closed 2 months ago
0
get rob knight data

#2 GavinHuttley closed 2 months ago
1
parallelise divergent

#1 GavinHuttley closed 2 months ago
2