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ICB-DCM
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pyPESTO
python Parameter EStimation TOolbox
https://pypesto.readthedocs.io
BSD 3-Clause "New" or "Revised" License
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Relative: fix log of zero for default 0 sigma values
#1377
Doresic
closed
2 months ago
1
Require scipy<1.13.0 for pypesto[pymc] only for python3.9 (#1360)
#1376
dweindl
closed
2 months ago
0
Optimization with conditions specific for observables fails
#1375
arrjon
closed
2 months ago
4
Fixing PyPi on Main
#1374
PaulJonasJost
closed
2 months ago
1
fixed wrong filepath for config file.
#1373
PaulJonasJost
closed
2 months ago
1
Removing Benchmark collection for deploy. Update action versions. (#1371)
#1372
PaulJonasJost
closed
2 months ago
1
Removing Benchmark collection for deploy. Update action versions.
#1371
PaulJonasJost
closed
2 months ago
1
add load method to Hdf5AmiciHistory
#1370
plakrisenko
closed
2 months ago
1
Waterfall plot: use `order_by_id` with `start_indices`
#1369
dilpath
closed
2 months ago
2
Waterfall plot error: `order_by_id` and `start_indices` do not work together
#1368
plakrisenko
closed
2 months ago
0
Fix Optimization Summary failing after loading from hdf5
#1367
PaulJonasJost
closed
1 month ago
7
prepare release v0.5.0
#1366
PaulJonasJost
closed
2 months ago
4
Correlation plot with nans
#1365
PaulJonasJost
closed
2 months ago
2
Added option to sample startpoints of a problem, from the problem directly
#1364
PaulJonasJost
closed
2 months ago
1
Add support for complex noise formulae in roadrunner
#1363
PaulJonasJost
closed
2 months ago
2
Frequent timeouts of RTD builds
#1362
dweindl
closed
2 months ago
3
Fix Chain Burn-in Calculation in Thermodynamic Integration
#1361
arrjon
closed
3 months ago
1
Require scipy<1.13.0 for pypesto[pymc]
#1360
dweindl
closed
3 months ago
1
Handling of simulation failures in AmiciPredictor
#1359
dweindl
opened
3 months ago
0
General Discussion regarding Ensemble
#1358
PaulJonasJost
opened
3 months ago
7
What's the purpose of `Ensemble.predictions`?
#1357
dweindl
opened
3 months ago
1
Import arviz only for type checking
#1356
dweindl
closed
3 months ago
0
Move petab imports for PetabImporter
#1355
m-philipps
closed
2 months ago
2
ImportError: cannot import name 'gaussian' from 'scipy.signal'
#1354
dweindl
closed
2 months ago
5
SacessOptimizer: use 'spawn' start method
#1353
dweindl
closed
3 months ago
0
pre-commit: pyupgrade
#1352
dweindl
closed
3 months ago
3
Ensembles: don't expect `OptimizerResult.id` to be convertible to `int`
#1351
dweindl
closed
3 months ago
1
Relative: implement log-normal distribution
#1350
Doresic
opened
3 months ago
0
`Ensemble.from_optimization_{history,endpoints}` assumes that `OptimizerResult.id` is always convertible to `int`
#1349
dweindl
closed
2 months ago
0
Added a brief roadrunner example.
#1348
PaulJonasJost
closed
2 months ago
1
Added deepcpy functionality and small test for roadrunner.
#1347
PaulJonasJost
closed
3 months ago
1
fix jax deprecations
#1346
FFroehlich
closed
3 months ago
2
Remove some warnings
#1345
PaulJonasJost
closed
3 months ago
1
Fixed some leftover amici depractions.
#1344
PaulJonasJost
closed
3 months ago
1
SacessOptimizer: Allow specifying multiprocessing start method
#1343
dweindl
closed
2 months ago
0
Release v0.5.0
#1342
PaulJonasJost
closed
2 months ago
1
Changed to use API token for deployment
#1341
PaulJonasJost
closed
3 months ago
1
Petab import in try/except clause that fails when amici is not available
#1340
m-philipps
closed
2 months ago
3
Select: problem-specific minimize method for SaCeSS
#1339
dilpath
opened
3 months ago
2
Select: support user-provided calibration results
#1338
dilpath
opened
3 months ago
1
Update jax objective to pure callback
#1337
FFroehlich
closed
2 months ago
0
Roadrunner as simulator
#1336
PaulJonasJost
closed
3 months ago
5
Visualize: add description of scale in parameter plots
#1335
Doresic
opened
3 months ago
0
Multistart optimization with parameter constraints
#1334
aidinbii
closed
3 months ago
12
Relative: Fix return of inner parameters on objective call
#1333
Doresic
closed
3 months ago
1
pypesto v0.4.2 not on pypi / fix pypi deployment
#1332
dweindl
closed
2 months ago
2
dynesty: new method to save only the raw dynesty sample results
#1331
dilpath
closed
3 months ago
4
Semiquantitative: fix inner opt tolerance
#1330
Doresic
closed
3 months ago
0
AmiciObjective / RelativeAmiciCalculator doesn't always provide `inner_parameters`
#1329
dweindl
closed
2 months ago
1
ESSOptimizer: Respect local_n2 in case of failed initial local search
#1328
dweindl
closed
3 months ago
1
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