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gEAR
The gEAR Portal was created as a data archive and viewer for gene expression data including microarrays, bulk RNA-Seq, single-cell RNA-Seq and more.
https://umgear.org
GNU Affero General Public License v3.0
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Add support for D. melanogaster into gEAR/NeMO portals
#692
jorvis
opened
1 day ago
0
snRNAseq Data Uploaded - Still Error on Display
#691
gear-portal-team
opened
5 days ago
2
V2 - De-duplicate code within the expression and projection pages
#690
adkinsrs
opened
1 week ago
0
Create tool to export gene cart SQL
#689
jorvis
closed
1 week ago
0
put the human's inner ear cells in order by the level of gene expression
#688
gear-portal-team
opened
1 week ago
4
V2 - Allow dataset to be added to a layout multiple times
#687
adkinsrs
opened
1 week ago
3
E-mails not currently sending on production server
#686
jorvis
closed
1 week ago
1
Figures for review paper
#685
gear-portal-team
opened
2 weeks ago
4
V2 - Expression/Projection View - Fix full-width "expression-only" tSNE displays
#684
adkinsrs
opened
2 weeks ago
1
V2 - Add "history state" for expression and projection pages
#683
adkinsrs
closed
1 week ago
5
Fixing bug where single-gene curator would not plot
#681
adkinsrs
closed
2 weeks ago
0
Resolves #678
#680
adkinsrs
closed
2 weeks ago
0
Bugfix 678 beta comparison tool fails to show conditions after selecting a dataset
#679
adkinsrs
closed
2 weeks ago
2
Beta comparison tool fails to show conditions after selecting a dataset
#678
jorvis
closed
2 weeks ago
0
Use GCP resources to auto-shut down devel VMs if idle or off-business hrs
#677
adkinsrs
opened
3 weeks ago
3
Update SSL keys on devel
#676
jorvis
closed
3 weeks ago
0
Add (even temporary) support to disable downloads of selected datasets
#675
jorvis
closed
2 weeks ago
1
V2 - update URL shortener "p" page
#674
adkinsrs
closed
1 week ago
1
Gene expression
#673
gear-portal-team
closed
1 week ago
3
Refactor dataset collection page for ui-v2
#671
adkinsrs
opened
1 month ago
4
Test upgrading scanpy/anndata
#670
adkinsrs
opened
1 month ago
2
Issue with clustering
#669
gear-portal-team
opened
1 month ago
4
Color customization in static tSNE/UMAP scatter plots
#668
carlocolantuoni
closed
1 month ago
6
High resolution .png download for static tSNE/MAP scatter plots
#667
carlocolantuoni
closed
1 week ago
25
When projecting a weighted gene cart, if all weights are 1 or 0, then add "binary gene count" projection option
#666
carlocolantuoni
closed
1 month ago
4
UI-V2 - Potential race condition loading plugins
#665
adkinsrs
opened
1 month ago
2
Ability to do some common expression normalizations in the dataset curators
#664
JPReceveur
opened
1 month ago
6
sc Workbench primary analysis error for non-tsne/umap coordinates
#663
JPReceveur
opened
1 month ago
3
Dataset/Gene/Pattern selectors - Clear search results if text input field is cleared
#662
adkinsrs
closed
1 month ago
1
Missing dataset in beta
#661
echrysostomou
opened
2 months ago
0
Refactor user account creation page for UI-V2
#660
jorvis
opened
2 months ago
0
Ensure history recording functions on main are also on ui-v2 branch
#659
jorvis
closed
2 months ago
1
Download Raw or Seurat Object
#658
gear-portal-team
closed
2 months ago
1
Gene Collection Selector - Error when selecting "Recent"
#657
adkinsrs
closed
1 month ago
1
ui-v2 Refactor projection search page
#656
adkinsrs
closed
1 month ago
1
UI v2 height addition
#655
adkinsrs
closed
2 months ago
2
UI v2 height addition
#654
adkinsrs
closed
2 months ago
0
Gene Mapping System Used in Inner Ear Organoid (Steinhart) Dataset
#653
gear-portal-team
closed
2 months ago
4
UI v2 orthology refactoring
#652
adkinsrs
closed
2 months ago
0
Database download for enrichment analysis
#651
gear-portal-team
closed
2 months ago
2
Backport fixednmf v2 to v1
#650
adkinsrs
closed
2 months ago
0
Decouple orthology mapping from plotting API calls; Create "orthologs" dropdown
#649
adkinsrs
closed
2 months ago
1
Expression page - Add ability to download expression data for just a gene or subset of genes
#648
adkinsrs
opened
2 months ago
0
SC-Workbench - possibility of subclustering
#647
adkinsrs
opened
2 months ago
0
SC workbench - ability to download intermediate h5ad files
#646
adkinsrs
opened
2 months ago
0
Index and expression page - highlight region if no dataset collection selected after searching
#645
adkinsrs
closed
2 months ago
2
Compare tool - add DESeq significance testing
#644
adkinsrs
opened
2 months ago
0
Compare tool - add FDR correction for statistical tests
#643
adkinsrs
opened
2 months ago
0
Changing scoring method results in nonsensical values for svgs
#642
JPReceveur
opened
2 months ago
3
gene expression search behavior for missing genes
#641
JPReceveur
opened
2 months ago
0
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