Script to sweep though all analyses and make louvain clustering categorial

IGS / gEAR

The gEAR Portal was created as a data archive and viewer for gene expression data including microarrays, bulk RNA-Seq, single-cell RNA-Seq and more.

https://umgear.org

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Script to sweep though all analyses and make louvain clustering categorial #461

Open adkinsrs opened 2 years ago

adkinsrs commented 2 years ago

    Updates in #451 have fixed things here BUT we need to sweep through already-uploaded datasets and correct the type of this column.

Originally posted by @jorvis in https://github.com/IGS/gEAR/issues/448#issuecomment-1268862385

adkinsrs commented 1 month ago

Not sure if this is still needed. Currently we perform leiden clustering (in v2) but still keep the name as "louvain" internally for legacy purposes. Both clustering algorithms return the same results