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INCATools / ubergraph

Integrated OBO ontology store
BSD 3-Clause "New" or "Revised" License
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Add some obo-db-ingests into ubergraph (EC, RHEA, SwissLipid) #134

Open cmungall opened 9 months ago

cmungall commented 9 months ago

A lot of useful databases-as-ontologies here:

https://github.com/biopragmatics/obo-db-ingest

We may want to be conservative in loading some of these, ensuring there is agreement on URI expansions of the prefix before creating confusion by proliferating yet new expansions.

We are also loading some of these in semsql: https://github.com/INCATools/semantic-sql/issues/45

cc @cthoyt @matentzn

cthoyt commented 9 months ago

Full list browsable at https://biopragmatics.github.io/obo-db-ingest/ and manifest downloadable at https://github.com/biopragmatics/obo-db-ingest/blob/main/docs/_data/manifest.yml