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IQSS / dataverse-docker

Dataverse 6.2 on Docker with integrated services called "Archive in a box" and could be used both as demo and production system and easily integrated with other services.
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dataverse 5.11 doesn't run #74

Open transfluxus opened 2 years ago

transfluxus commented 2 years ago

Hi,

I recently tried dataverse 5.9 and it generally worked ok. However I was forced to start all over, after I messed up adding new metadatablocks and operating around in the database in order to delete them again. So I started over with the new docker with dataverse 5.11.

However, After logging in as admin and changing the password the homepage says: "Internal Server Error - An unexpected error was encountered, no more information is available."

and this is the output in the terminal:

solr             | 2022-10-26 14:27:59.699 INFO  (qtp380812044-23) [   x:collection1] o.a.s.c.S.Request [collection1]  webapp=/solr path=/select params={facet.field=dvCategory&facet.field=metadataSource&facet.field=publicationDate&facet.field=publicationStatus&facet.field=fileTypeGroupFacet&facet.field=dvObjectType&facet.field=fileTag&facet.field=fileAccess&qt=/select&hl=true&fl=*,score&start=0&sort=dateSort+desc&fq=dvObjectType:(dataverses+OR+datasets)&fq={!join+from%3DdefinitionPointDocId+to%3Did}discoverableBy:(group_public+OR+group_user1+OR+group_builtIn/authenticated-users+OR+group_builtIn/all-users)&rows=10&version=2&hl.simple.pre=<span+class%3D"search-term-match">&hl.snippets=1&facet.query=*&q=*&hl.simple.post=</span>&hl.fl=variableName&hl.fl=variableNotes&hl.fl=filePersistentId&hl.fl=variableUniverse&hl.fl=interviewInstructions&hl.fl=description&hl.fl=fileTypeDisplay&hl.fl=dsPersistentId&hl.fl=affiliation_ss&hl.fl=dsPublicationDate&hl.fl=literalQuestion&hl.fl=fileNameWithoutExtension&hl.fl=name&hl.fl=postQuestion&hl.fl=variableLabel&hl.fl=fileTags&hl.fl=fileType&facet=true&wt=javabin} hits=0 status=0 QTime=2
dataverse        | [#|2022-10-26T14:27:59.702+0000|WARNING|Payara 5.2021.1|javax.enterprise.ejb.container|_ThreadID=102;_ThreadName=http-thread-pool::http-listener-1(5);_TimeMillis=1666794479702;_LevelValue=900;_MessageID=AS-EJB-00056;|
dataverse        |   A system exception occurred during an invocation on EJB SearchServiceBean, method: public edu.harvard.iq.dataverse.search.SolrQueryResponse edu.harvard.iq.dataverse.search.SearchServiceBean.search(edu.harvard.iq.dataverse.engine.command.DataverseRequest,java.util.List,java.lang.String,java.util.List,java.lang.String,java.lang.String,int,boolean,int,boolean) throws edu.harvard.iq.dataverse.search.SearchException|#]
dataverse        | 
dataverse        | [#|2022-10-26T14:27:59.702+0000|WARNING|Payara 5.2021.1|javax.enterprise.ejb.container|_ThreadID=102;_ThreadName=http-thread-pool::http-listener-1(5);_TimeMillis=1666794479702;_LevelValue=900;|
dataverse        |   javax.ejb.EJBException
dataverse        |  at com.sun.ejb.containers.EJBContainerTransactionManager.processSystemException(EJBContainerTransactionManager.java:723)
dataverse        |  at com.sun.ejb.containers.EJBContainerTransactionManager.completeNewTx(EJBContainerTransactionManager.java:652)
dataverse        |  at com.sun.ejb.containers.EJBContainerTransactionManager.postInvokeTx(EJBContainerTransactionManager.java:482)
dataverse        |  at com.sun.ejb.containers.BaseContainer.postInvokeTx(BaseContainer.java:4592)
dataverse        |  at com.sun.ejb.containers.BaseContainer.postInvoke(BaseContainer.java:2125)
dataverse        |  at com.sun.ejb.containers.BaseContainer.postInvoke(BaseContainer.java:2095)
dataverse        |  at com.sun.ejb.containers.EJBLocalObjectInvocationHandler.invoke(EJBLocalObjectInvocationHandler.java:220)
dataverse        |  at com.sun.ejb.containers.EJBLocalObjectInvocationHandlerDelegate.invoke(EJBLocalObjectInvocationHandlerDelegate.java:90)
dataverse        |  at com.sun.proxy.$Proxy568.search(Unknown Source)
dataverse        |  at edu.harvard.iq.dataverse.search.__EJB31_Generated__SearchServiceBean__Intf____Bean__.search(Unknown Source)
dataverse        |  at edu.harvard.iq.dataverse.search.SearchIncludeFragment.search(SearchIncludeFragment.java:357)
dataverse        |  at edu.harvard.iq.dataverse.search.SearchIncludeFragment.search(SearchIncludeFragment.java:220)
dataverse        |  at java.base/jdk.internal.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
dataverse        |  at java.base/jdk.internal.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62)
dataverse        |  at java.base/jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
dataverse        |  at java.base/java.lang.reflect.Method.invoke(Method.java:566)
dataverse        |  at javax.el.ELUtil.invokeMethod(ELUtil.java:239)
dataverse        |  at javax.el.BeanELResolver.invoke(BeanELResolver.java:440)
dataverse        |  at javax.el.CompositeELResolver.invoke(CompositeELResolver.java:198)
dataverse        |  at com.sun.el.parser.AstValue.invoke(AstValue.java:257)
dataverse        |  at com.sun.el.MethodExpressionImpl.invoke(MethodExpressionImpl.java:237)
dataverse        |  at org.jboss.weld.module.web.util.el.ForwardingMethodExpression.invoke(ForwardingMethodExpression.java:40)
dataverse        |  at org.jboss.weld.module.web.el.WeldMethodExpression.invoke(WeldMethodExpression.java:50)
dataverse        |  at com.sun.faces.facelets.el.TagMethodExpression.invoke(TagMethodExpression.java:65)
dataverse        |  at com.sun.faces.application.MethodBindingMethodExpressionAdapter.invoke(MethodBindingMethodExpressionAdapter.java:66)
dataverse        |  at com.sun.faces.application.ActionListenerImpl.getNavigationOutcome(ActionListenerImpl.java:82)
dataverse        |  at com.sun.faces.application.ActionListenerImpl.processAction(ActionListenerImpl.java:71)
dataverse        |  at javax.faces.component.UIViewAction.broadcast(UIViewAction.java:548)
dataverse        |  at javax.faces.component.UIViewRoot.broadcastEvents(UIViewRoot.java:847)
dataverse        |  at javax.faces.component.UIViewRoot.processApplication(UIViewRoot.java:1396)
dataverse        |  at com.sun.faces.lifecycle.InvokeApplicationPhase.execute(InvokeApplicationPhase.java:58)
dataverse        |  at com.sun.faces.lifecycle.Phase.doPhase(Phase.java:76)
dataverse        |  at com.sun.faces.lifecycle.LifecycleImpl.execute(LifecycleImpl.java:177)
dataverse        |  at javax.faces.webapp.FacesServlet.executeLifecyle(FacesServlet.java:707)
dataverse        |  at javax.faces.webapp.FacesServlet.service(FacesServlet.java:451)
dataverse        |  at org.apache.catalina.core.StandardWrapper.service(StandardWrapper.java:1636)
dataverse        |  at org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:331)
dataverse        |  at org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:211)
dataverse        |  at org.ocpsoft.rewrite.servlet.RewriteFilter.doFilter(RewriteFilter.java:226)
dataverse        |  at org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:253)
dataverse        |  at org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:211)
dataverse        |  at org.apache.catalina.core.ApplicationDispatcher.doInvoke(ApplicationDispatcher.java:816)
dataverse        |  at org.apache.catalina.core.ApplicationDispatcher.invoke(ApplicationDispatcher.java:683)
dataverse        |  at org.apache.catalina.core.ApplicationDispatcher.processRequest(ApplicationDispatcher.java:527)
dataverse        |  at org.apache.catalina.core.ApplicationDispatcher.doDispatch(ApplicationDispatcher.java:497)
dataverse        |  at org.apache.catalina.core.ApplicationDispatcher.dispatch(ApplicationDispatcher.java:379)
dataverse        |  at org.apache.catalina.core.ApplicationDispatcher.forward(ApplicationDispatcher.java:329)
dataverse        |  at edu.harvard.iq.dataverse.HomepageServlet.processRequest(HomepageServlet.java:45)
dataverse        |  at edu.harvard.iq.dataverse.HomepageServlet.doGet(HomepageServlet.java:61)
dataverse        |  at javax.servlet.http.HttpServlet.service(HttpServlet.java:645)
dataverse        |  at javax.servlet.http.HttpServlet.service(HttpServlet.java:750)
dataverse        |  at org.apache.catalina.core.StandardWrapper.service(StandardWrapper.java:1636)
dataverse        |  at org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:331)
dataverse        |  at org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:211)
dataverse        |  at org.glassfish.tyrus.servlet.TyrusServletFilter.doFilter(TyrusServletFilter.java:282)
dataverse        |  at org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:253)
dataverse        |  at org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:211)
dataverse        |  at org.ocpsoft.rewrite.servlet.RewriteFilter.doFilter(RewriteFilter.java:226)
dataverse        |  at org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:253)
dataverse        |  at org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:211)
dataverse        |  at org.apache.catalina.core.StandardWrapperValve.invoke(StandardWrapperValve.java:257)
dataverse        |  at org.apache.catalina.core.StandardContextValve.invoke(StandardContextValve.java:161)
dataverse        |  at org.apache.catalina.core.StandardPipeline.doInvoke(StandardPipeline.java:757)
dataverse        |  at org.apache.catalina.core.StandardPipeline.invoke(StandardPipeline.java:577)
dataverse        |  at com.sun.enterprise.web.WebPipeline.invoke(WebPipeline.java:99)
dataverse        |  at org.apache.catalina.core.StandardHostValve.invoke(StandardHostValve.java:158)
dataverse        |  at org.apache.catalina.connector.CoyoteAdapter.doService(CoyoteAdapter.java:371)
dataverse        |  at org.apache.catalina.connector.CoyoteAdapter.service(CoyoteAdapter.java:238)
dataverse        |  at com.sun.enterprise.v3.services.impl.ContainerMapper$HttpHandlerCallable.call(ContainerMapper.java:520)
dataverse        |  at com.sun.enterprise.v3.services.impl.ContainerMapper.service(ContainerMapper.java:217)
dataverse        |  at org.glassfish.grizzly.http.server.HttpHandler.runService(HttpHandler.java:182)
dataverse        |  at org.glassfish.grizzly.http.server.HttpHandler.doHandle(HttpHandler.java:156)
dataverse        |  at org.glassfish.grizzly.http.server.HttpServerFilter.handleRead(HttpServerFilter.java:218)
dataverse        |  at org.glassfish.grizzly.filterchain.ExecutorResolver$9.execute(ExecutorResolver.java:95)
dataverse        |  at org.glassfish.grizzly.filterchain.DefaultFilterChain.executeFilter(DefaultFilterChain.java:260)
dataverse        |  at org.glassfish.grizzly.filterchain.DefaultFilterChain.executeChainPart(DefaultFilterChain.java:177)
dataverse        |  at org.glassfish.grizzly.filterchain.DefaultFilterChain.execute(DefaultFilterChain.java:109)
dataverse        |  at org.glassfish.grizzly.filterchain.DefaultFilterChain.process(DefaultFilterChain.java:88)
dataverse        |  at org.glassfish.grizzly.ProcessorExecutor.execute(ProcessorExecutor.java:53)
dataverse        |  at org.glassfish.grizzly.nio.transport.TCPNIOTransport.fireIOEvent(TCPNIOTransport.java:524)
dataverse        |  at org.glassfish.grizzly.strategies.AbstractIOStrategy.fireIOEvent(AbstractIOStrategy.java:89)
dataverse        |  at org.glassfish.grizzly.strategies.WorkerThreadIOStrategy.run0(WorkerThreadIOStrategy.java:94)
dataverse        |  at org.glassfish.grizzly.strategies.WorkerThreadIOStrategy.access$100(WorkerThreadIOStrategy.java:33)
dataverse        |  at org.glassfish.grizzly.strategies.WorkerThreadIOStrategy$WorkerThreadRunnable.run(WorkerThreadIOStrategy.java:114)
dataverse        |  at org.glassfish.grizzly.threadpool.AbstractThreadPool$Worker.doWork(AbstractThreadPool.java:569)
dataverse        |  at org.glassfish.grizzly.threadpool.AbstractThreadPool$Worker.run(AbstractThreadPool.java:549)
dataverse        |  at java.base/java.lang.Thread.run(Thread.java:834)
dataverse        | Caused by: java.lang.NullPointerException
dataverse        |  at edu.harvard.iq.dataverse.search.SearchServiceBean.search(SearchServiceBean.java:353)
dataverse        |  at java.base/jdk.internal.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
dataverse        |  at java.base/jdk.internal.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62)
dataverse        |  at java.base/jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
dataverse        |  at java.base/java.lang.reflect.Method.invoke(Method.java:566)
dataverse        |  at org.glassfish.ejb.security.application.EJBSecurityManager.runMethod(EJBSecurityManager.java:588)
dataverse        |  at org.glassfish.ejb.security.application.EJBSecurityManager.invoke(EJBSecurityManager.java:408)
dataverse        |  at com.sun.ejb.containers.BaseContainer.invokeBeanMethod(BaseContainer.java:4826)
dataverse        |  at com.sun.ejb.EjbInvocation.invokeBeanMethod(EjbInvocation.java:665)
dataverse        |  at com.sun.ejb.containers.interceptors.AroundInvokeChainImpl.invokeNext(InterceptorManager.java:834)
dataverse        |  at com.sun.ejb.EjbInvocation.proceed(EjbInvocation.java:615)
dataverse        |  at com.sun.ejb.containers.interceptors.SystemInterceptorProxy.doCall(SystemInterceptorProxy.java:163)
dataverse        |  at com.sun.ejb.containers.interceptors.SystemInterceptorProxy.aroundInvoke(SystemInterceptorProxy.java:140)
dataverse        |  at jdk.internal.reflect.GeneratedMethodAccessor246.invoke(Unknown Source)
dataverse        |  at java.base/jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
dataverse        |  at java.base/java.lang.reflect.Method.invoke(Method.java:566)
dataverse        |  at com.sun.ejb.containers.interceptors.AroundInvokeInterceptor.intercept(InterceptorManager.java:888)
dataverse        |  at com.sun.ejb.containers.interceptors.AroundInvokeChainImpl.invokeNext(InterceptorManager.java:833)
dataverse        |  at com.sun.ejb.EjbInvocation.proceed(EjbInvocation.java:615)
dataverse        |  at org.jboss.weld.module.ejb.AbstractEJBRequestScopeActivationInterceptor.aroundInvoke(AbstractEJBRequestScopeActivationInterceptor.java:72)
dataverse        |  at org.jboss.weld.module.ejb.SessionBeanInterceptor.aroundInvoke(SessionBeanInterceptor.java:52)
dataverse        |  at jdk.internal.reflect.GeneratedMethodAccessor243.invoke(Unknown Source)
dataverse        |  at java.base/jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
dataverse        |  at java.base/java.lang.reflect.Method.invoke(Method.java:566)
dataverse        |  at com.sun.ejb.containers.interceptors.AroundInvokeInterceptor.intercept(InterceptorManager.java:888)
dataverse        |  at com.sun.ejb.containers.interceptors.AroundInvokeChainImpl.invokeNext(InterceptorManager.java:833)
dataverse        |  at com.sun.ejb.containers.interceptors.InterceptorManager.intercept(InterceptorManager.java:375)
dataverse        |  at com.sun.ejb.containers.BaseContainer.__intercept(BaseContainer.java:4798)
dataverse        |  at com.sun.ejb.containers.BaseContainer.intercept(BaseContainer.java:4786)
dataverse        |  at com.sun.ejb.containers.EJBLocalObjectInvocationHandler.invoke(EJBLocalObjectInvocationHandler.java:212)
dataverse        |  ... 80 more
dataverse        | |#]
dataverse        | 
dataverse        | [#|2022-10-26T14:27:59.703+0000|WARNING|Payara 5.2021.1|javax.enterprise.resource.webcontainer.jsf.lifecycle|_ThreadID=102;_ThreadName=http-thread-pool::http-listener-1(5);_TimeMillis=1666794479703;_LevelValue=900;|
dataverse        |   #{SearchIncludeFragment.search()}: javax.ejb.EJBException
dataverse        | javax.faces.FacesException: #{SearchIncludeFragment.search()}: javax.ejb.EJBException
dataverse        |  at com.sun.faces.application.ActionListenerImpl.getNavigationOutcome(ActionListenerImpl.java:96)
dataverse        |  at com.sun.faces.application.ActionListenerImpl.processAction(ActionListenerImpl.java:71)
dataverse        |  at javax.faces.component.UIViewAction.broadcast(UIViewAction.java:548)
dataverse        |  at javax.faces.component.UIViewRoot.broadcastEvents(UIViewRoot.java:847)
dataverse        |  at javax.faces.component.UIViewRoot.processApplication(UIViewRoot.java:1396)
dataverse        |  at com.sun.faces.lifecycle.InvokeApplicationPhase.execute(InvokeApplicationPhase.java:58)
dataverse        |  at com.sun.faces.lifecycle.Phase.doPhase(Phase.java:76)
dataverse        |  at com.sun.faces.lifecycle.LifecycleImpl.execute(LifecycleImpl.java:177)
dataverse        |  at javax.faces.webapp.FacesServlet.executeLifecyle(FacesServlet.java:707)
dataverse        |  at javax.faces.webapp.FacesServlet.service(FacesServlet.java:451)
dataverse        |  at org.apache.catalina.core.StandardWrapper.service(StandardWrapper.java:1636)
dataverse        |  at org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:331)
dataverse        |  at org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:211)
dataverse        |  at org.ocpsoft.rewrite.servlet.RewriteFilter.doFilter(RewriteFilter.java:226)
dataverse        |  at org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:253)
dataverse        |  at org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:211)
dataverse        |  at org.apache.catalina.core.ApplicationDispatcher.doInvoke(ApplicationDispatcher.java:816)
dataverse        |  at org.apache.catalina.core.ApplicationDispatcher.invoke(ApplicationDispatcher.java:683)
dataverse        |  at org.apache.catalina.core.ApplicationDispatcher.processRequest(ApplicationDispatcher.java:527)
dataverse        |  at org.apache.catalina.core.ApplicationDispatcher.doDispatch(ApplicationDispatcher.java:497)
dataverse        |  at org.apache.catalina.core.ApplicationDispatcher.dispatch(ApplicationDispatcher.java:379)
dataverse        |  at org.apache.catalina.core.ApplicationDispatcher.forward(ApplicationDispatcher.java:329)
dataverse        |  at edu.harvard.iq.dataverse.HomepageServlet.processRequest(HomepageServlet.java:45)
dataverse        |  at edu.harvard.iq.dataverse.HomepageServlet.doGet(HomepageServlet.java:61)
dataverse        |  at javax.servlet.http.HttpServlet.service(HttpServlet.java:645)
dataverse        |  at javax.servlet.http.HttpServlet.service(HttpServlet.java:750)
dataverse        |  at org.apache.catalina.core.StandardWrapper.service(StandardWrapper.java:1636)
dataverse        |  at org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:331)
dataverse        |  at org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:211)
dataverse        |  at org.glassfish.tyrus.servlet.TyrusServletFilter.doFilter(TyrusServletFilter.java:282)
dataverse        |  at org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:253)
dataverse        |  at org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:211)
dataverse        |  at org.ocpsoft.rewrite.servlet.RewriteFilter.doFilter(RewriteFilter.java:226)
dataverse        |  at org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:253)
dataverse        |  at org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:211)
dataverse        |  at org.apache.catalina.core.StandardWrapperValve.invoke(StandardWrapperValve.java:257)
dataverse        |  at org.apache.catalina.core.StandardContextValve.invoke(StandardContextValve.java:161)
dataverse        |  at org.apache.catalina.core.StandardPipeline.doInvoke(StandardPipeline.java:757)
dataverse        |  at org.apache.catalina.core.StandardPipeline.invoke(StandardPipeline.java:577)
dataverse        |  at com.sun.enterprise.web.WebPipeline.invoke(WebPipeline.java:99)
dataverse        |  at org.apache.catalina.core.StandardHostValve.invoke(StandardHostValve.java:158)
dataverse        |  at org.apache.catalina.connector.CoyoteAdapter.doService(CoyoteAdapter.java:371)
dataverse        |  at org.apache.catalina.connector.CoyoteAdapter.service(CoyoteAdapter.java:238)
dataverse        |  at com.sun.enterprise.v3.services.impl.ContainerMapper$HttpHandlerCallable.call(ContainerMapper.java:520)
dataverse        |  at com.sun.enterprise.v3.services.impl.ContainerMapper.service(ContainerMapper.java:217)
dataverse        |  at org.glassfish.grizzly.http.server.HttpHandler.runService(HttpHandler.java:182)
dataverse        |  at org.glassfish.grizzly.http.server.HttpHandler.doHandle(HttpHandler.java:156)
dataverse        |  at org.glassfish.grizzly.http.server.HttpServerFilter.handleRead(HttpServerFilter.java:218)
dataverse        |  at org.glassfish.grizzly.filterchain.ExecutorResolver$9.execute(ExecutorResolver.java:95)
dataverse        |  at org.glassfish.grizzly.filterchain.DefaultFilterChain.executeFilter(DefaultFilterChain.java:260)
dataverse        |  at org.glassfish.grizzly.filterchain.DefaultFilterChain.executeChainPart(DefaultFilterChain.java:177)
dataverse        |  at org.glassfish.grizzly.filterchain.DefaultFilterChain.execute(DefaultFilterChain.java:109)
dataverse        |  at org.glassfish.grizzly.filterchain.DefaultFilterChain.process(DefaultFilterChain.java:88)
dataverse        |  at org.glassfish.grizzly.ProcessorExecutor.execute(ProcessorExecutor.java:53)
dataverse        |  at org.glassfish.grizzly.nio.transport.TCPNIOTransport.fireIOEvent(TCPNIOTransport.java:524)
dataverse        |  at org.glassfish.grizzly.strategies.AbstractIOStrategy.fireIOEvent(AbstractIOStrategy.java:89)
dataverse        |  at org.glassfish.grizzly.strategies.WorkerThreadIOStrategy.run0(WorkerThreadIOStrategy.java:94)
dataverse        |  at org.glassfish.grizzly.strategies.WorkerThreadIOStrategy.access$100(WorkerThreadIOStrategy.java:33)
dataverse        |  at org.glassfish.grizzly.strategies.WorkerThreadIOStrategy$WorkerThreadRunnable.run(WorkerThreadIOStrategy.java:114)
dataverse        |  at org.glassfish.grizzly.threadpool.AbstractThreadPool$Worker.doWork(AbstractThreadPool.java:569)
dataverse        |  at org.glassfish.grizzly.threadpool.AbstractThreadPool$Worker.run(AbstractThreadPool.java:549)
dataverse        |  at java.base/java.lang.Thread.run(Thread.java:834)
dataverse        | Caused by: javax.faces.el.EvaluationException: javax.ejb.EJBException
dataverse        |  at com.sun.faces.application.MethodBindingMethodExpressionAdapter.invoke(MethodBindingMethodExpressionAdapter.java:76)
dataverse        |  at com.sun.faces.application.ActionListenerImpl.getNavigationOutcome(ActionListenerImpl.java:82)
dataverse        |  ... 61 more
dataverse        | Caused by: javax.ejb.EJBException
dataverse        |  at com.sun.ejb.containers.EJBContainerTransactionManager.processSystemException(EJBContainerTransactionManager.java:723)
dataverse        |  at com.sun.ejb.containers.EJBContainerTransactionManager.completeNewTx(EJBContainerTransactionManager.java:652)
dataverse        |  at com.sun.ejb.containers.EJBContainerTransactionManager.postInvokeTx(EJBContainerTransactionManager.java:482)
dataverse        |  at com.sun.ejb.containers.BaseContainer.postInvokeTx(BaseContainer.java:4592)
dataverse        |  at com.sun.ejb.containers.BaseContainer.postInvoke(BaseContainer.java:2125)
dataverse        |  at com.sun.ejb.containers.BaseContainer.postInvoke(BaseContainer.java:2095)
dataverse        |  at com.sun.ejb.containers.EJBLocalObjectInvocationHandler.invoke(EJBLocalObjectInvocationHandler.java:220)
dataverse        |  at com.sun.ejb.containers.EJBLocalObjectInvocationHandlerDelegate.invoke(EJBLocalObjectInvocationHandlerDelegate.java:90)
dataverse        |  at com.sun.proxy.$Proxy568.search(Unknown Source)
dataverse        |  at edu.harvard.iq.dataverse.search.__EJB31_Generated__SearchServiceBean__Intf____Bean__.search(Unknown Source)
dataverse        |  at edu.harvard.iq.dataverse.search.SearchIncludeFragment.search(SearchIncludeFragment.java:357)
dataverse        |  at edu.harvard.iq.dataverse.search.SearchIncludeFragment.search(SearchIncludeFragment.java:220)
dataverse        |  at java.base/jdk.internal.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
dataverse        |  at java.base/jdk.internal.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62)
dataverse        |  at java.base/jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
dataverse        |  at java.base/java.lang.reflect.Method.invoke(Method.java:566)
dataverse        |  at javax.el.ELUtil.invokeMethod(ELUtil.java:239)
dataverse        |  at javax.el.BeanELResolver.invoke(BeanELResolver.java:440)
dataverse        |  at javax.el.CompositeELResolver.invoke(CompositeELResolver.java:198)
dataverse        |  at com.sun.el.parser.AstValue.invoke(AstValue.java:257)
dataverse        |  at com.sun.el.MethodExpressionImpl.invoke(MethodExpressionImpl.java:237)
dataverse        |  at org.jboss.weld.module.web.util.el.ForwardingMethodExpression.invoke(ForwardingMethodExpression.java:40)
dataverse        |  at org.jboss.weld.module.web.el.WeldMethodExpression.invoke(WeldMethodExpression.java:50)
dataverse        |  at com.sun.faces.facelets.el.TagMethodExpression.invoke(TagMethodExpression.java:65)
dataverse        |  at com.sun.faces.application.MethodBindingMethodExpressionAdapter.invoke(MethodBindingMethodExpressionAdapter.java:66)
dataverse        |  ... 62 more
dataverse        | Caused by: java.lang.NullPointerException
dataverse        |  at edu.harvard.iq.dataverse.search.SearchServiceBean.search(SearchServiceBean.java:353)
dataverse        |  at java.base/jdk.internal.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
dataverse        |  at java.base/jdk.internal.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62)
dataverse        |  at java.base/jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
dataverse        |  at java.base/java.lang.reflect.Method.invoke(Method.java:566)
dataverse        |  at org.glassfish.ejb.security.application.EJBSecurityManager.runMethod(EJBSecurityManager.java:588)
dataverse        |  at org.glassfish.ejb.security.application.EJBSecurityManager.invoke(EJBSecurityManager.java:408)
dataverse        |  at com.sun.ejb.containers.BaseContainer.invokeBeanMethod(BaseContainer.java:4826)
dataverse        |  at com.sun.ejb.EjbInvocation.invokeBeanMethod(EjbInvocation.java:665)
dataverse        |  at com.sun.ejb.containers.interceptors.AroundInvokeChainImpl.invokeNext(InterceptorManager.java:834)
dataverse        |  at com.sun.ejb.EjbInvocation.proceed(EjbInvocation.java:615)
dataverse        |  at com.sun.ejb.containers.interceptors.SystemInterceptorProxy.doCall(SystemInterceptorProxy.java:163)
dataverse        |  at com.sun.ejb.containers.interceptors.SystemInterceptorProxy.aroundInvoke(SystemInterceptorProxy.java:140)
dataverse        |  at jdk.internal.reflect.GeneratedMethodAccessor246.invoke(Unknown Source)
dataverse        |  at java.base/jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
dataverse        |  at java.base/java.lang.reflect.Method.invoke(Method.java:566)
dataverse        |  at com.sun.ejb.containers.interceptors.AroundInvokeInterceptor.intercept(InterceptorManager.java:888)
dataverse        |  at com.sun.ejb.containers.interceptors.AroundInvokeChainImpl.invokeNext(InterceptorManager.java:833)
dataverse        |  at com.sun.ejb.EjbInvocation.proceed(EjbInvocation.java:615)
dataverse        |  at org.jboss.weld.module.ejb.AbstractEJBRequestScopeActivationInterceptor.aroundInvoke(AbstractEJBRequestScopeActivationInterceptor.java:72)
dataverse        |  at org.jboss.weld.module.ejb.SessionBeanInterceptor.aroundInvoke(SessionBeanInterceptor.java:52)
dataverse        |  at jdk.internal.reflect.GeneratedMethodAccessor243.invoke(Unknown Source)
dataverse        |  at java.base/jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
dataverse        |  at java.base/java.lang.reflect.Method.invoke(Method.java:566)
dataverse        |  at com.sun.ejb.containers.interceptors.AroundInvokeInterceptor.intercept(InterceptorManager.java:888)
dataverse        |  at com.sun.ejb.containers.interceptors.AroundInvokeChainImpl.invokeNext(InterceptorManager.java:833)
dataverse        |  at com.sun.ejb.containers.interceptors.InterceptorManager.intercept(InterceptorManager.java:375)
dataverse        |  at com.sun.ejb.containers.BaseContainer.__intercept(BaseContainer.java:4798)
dataverse        |  at com.sun.ejb.containers.BaseContainer.intercept(BaseContainer.java:4786)
dataverse        |  at com.sun.ejb.containers.EJBLocalObjectInvocationHandler.invoke(EJBLocalObjectInvocationHandler.java:212)
dataverse        |  ... 80 more
dataverse        | |#]
dataverse        | 
dataverse        | [#|2022-10-26T14:27:59.704+0000|WARNING|Payara 5.2021.1|javax.enterprise.web.core|_ThreadID=102;_ThreadName=http-thread-pool::http-listener-1(5);_TimeMillis=1666794479704;_LevelValue=900;|
dataverse        |   Servlet.service() for servlet Faces Servlet threw exception
dataverse        | java.lang.NullPointerException
dataverse        |  at edu.harvard.iq.dataverse.search.SearchServiceBean.search(SearchServiceBean.java:353)
dataverse        |  at java.base/jdk.internal.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
dataverse        |  at java.base/jdk.internal.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62)
dataverse        |  at java.base/jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
dataverse        |  at java.base/java.lang.reflect.Method.invoke(Method.java:566)
dataverse        |  at org.glassfish.ejb.security.application.EJBSecurityManager.runMethod(EJBSecurityManager.java:588)
dataverse        |  at org.glassfish.ejb.security.application.EJBSecurityManager.invoke(EJBSecurityManager.java:408)
dataverse        |  at com.sun.ejb.containers.BaseContainer.invokeBeanMethod(BaseContainer.java:4826)
dataverse        |  at com.sun.ejb.EjbInvocation.invokeBeanMethod(EjbInvocation.java:665)
dataverse        |  at com.sun.ejb.containers.interceptors.AroundInvokeChainImpl.invokeNext(InterceptorManager.java:834)
dataverse        |  at com.sun.ejb.EjbInvocation.proceed(EjbInvocation.java:615)
dataverse        |  at com.sun.ejb.containers.interceptors.SystemInterceptorProxy.doCall(SystemInterceptorProxy.java:163)
dataverse        |  at com.sun.ejb.containers.interceptors.SystemInterceptorProxy.aroundInvoke(SystemInterceptorProxy.java:140)
dataverse        |  at jdk.internal.reflect.GeneratedMethodAccessor246.invoke(Unknown Source)
dataverse        |  at java.base/jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
dataverse        |  at java.base/java.lang.reflect.Method.invoke(Method.java:566)
dataverse        |  at com.sun.ejb.containers.interceptors.AroundInvokeInterceptor.intercept(InterceptorManager.java:888)
dataverse        |  at com.sun.ejb.containers.interceptors.AroundInvokeChainImpl.invokeNext(InterceptorManager.java:833)
dataverse        |  at com.sun.ejb.EjbInvocation.proceed(EjbInvocation.java:615)
dataverse        |  at org.jboss.weld.module.ejb.AbstractEJBRequestScopeActivationInterceptor.aroundInvoke(AbstractEJBRequestScopeActivationInterceptor.java:72)
dataverse        |  at org.jboss.weld.module.ejb.SessionBeanInterceptor.aroundInvoke(SessionBeanInterceptor.java:52)
dataverse        |  at jdk.internal.reflect.GeneratedMethodAccessor243.invoke(Unknown Source)
dataverse        |  at java.base/jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
dataverse        |  at java.base/java.lang.reflect.Method.invoke(Method.java:566)
dataverse        |  at com.sun.ejb.containers.interceptors.AroundInvokeInterceptor.intercept(InterceptorManager.java:888)
dataverse        |  at com.sun.ejb.containers.interceptors.AroundInvokeChainImpl.invokeNext(InterceptorManager.java:833)
dataverse        |  at com.sun.ejb.containers.interceptors.InterceptorManager.intercept(InterceptorManager.java:375)
dataverse        |  at com.sun.ejb.containers.BaseContainer.__intercept(BaseContainer.java:4798)
dataverse        |  at com.sun.ejb.containers.BaseContainer.intercept(BaseContainer.java:4786)
dataverse        |  at com.sun.ejb.containers.EJBLocalObjectInvocationHandler.invoke(EJBLocalObjectInvocationHandler.java:212)
dataverse        |  at com.sun.ejb.containers.EJBLocalObjectInvocationHandlerDelegate.invoke(EJBLocalObjectInvocationHandlerDelegate.java:90)
dataverse        |  at com.sun.proxy.$Proxy568.search(Unknown Source)
dataverse        |  at edu.harvard.iq.dataverse.search.__EJB31_Generated__SearchServiceBean__Intf____Bean__.search(Unknown Source)
dataverse        |  at edu.harvard.iq.dataverse.search.SearchIncludeFragment.search(SearchIncludeFragment.java:357)
dataverse        |  at edu.harvard.iq.dataverse.search.SearchIncludeFragment.search(SearchIncludeFragment.java:220)
dataverse        |  at java.base/jdk.internal.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
dataverse        |  at java.base/jdk.internal.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62)
dataverse        |  at java.base/jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
dataverse        |  at java.base/java.lang.reflect.Method.invoke(Method.java:566)
dataverse        |  at javax.el.ELUtil.invokeMethod(ELUtil.java:239)
dataverse        |  at javax.el.BeanELResolver.invoke(BeanELResolver.java:440)
dataverse        |  at javax.el.CompositeELResolver.invoke(CompositeELResolver.java:198)
dataverse        |  at com.sun.el.parser.AstValue.invoke(AstValue.java:257)
dataverse        |  at com.sun.el.MethodExpressionImpl.invoke(MethodExpressionImpl.java:237)
dataverse        |  at org.jboss.weld.module.web.util.el.ForwardingMethodExpression.invoke(ForwardingMethodExpression.java:40)
dataverse        |  at org.jboss.weld.module.web.el.WeldMethodExpression.invoke(WeldMethodExpression.java:50)
dataverse        |  at com.sun.faces.facelets.el.TagMethodExpression.invoke(TagMethodExpression.java:65)
dataverse        |  at com.sun.faces.application.MethodBindingMethodExpressionAdapter.invoke(MethodBindingMethodExpressionAdapter.java:66)
dataverse        |  at com.sun.faces.application.ActionListenerImpl.getNavigationOutcome(ActionListenerImpl.java:82)
dataverse        |  at com.sun.faces.application.ActionListenerImpl.processAction(ActionListenerImpl.java:71)
dataverse        |  at javax.faces.component.UIViewAction.broadcast(UIViewAction.java:548)
dataverse        |  at javax.faces.component.UIViewRoot.broadcastEvents(UIViewRoot.java:847)
dataverse        |  at javax.faces.component.UIViewRoot.processApplication(UIViewRoot.java:1396)
dataverse        |  at com.sun.faces.lifecycle.InvokeApplicationPhase.execute(InvokeApplicationPhase.java:58)
dataverse        |  at com.sun.faces.lifecycle.Phase.doPhase(Phase.java:76)
dataverse        |  at com.sun.faces.lifecycle.LifecycleImpl.execute(LifecycleImpl.java:177)
dataverse        |  at javax.faces.webapp.FacesServlet.executeLifecyle(FacesServlet.java:707)
dataverse        |  at javax.faces.webapp.FacesServlet.service(FacesServlet.java:451)
dataverse        |  at org.apache.catalina.core.StandardWrapper.service(StandardWrapper.java:1636)
dataverse        |  at org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:331)
dataverse        |  at org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:211)
dataverse        |  at org.ocpsoft.rewrite.servlet.RewriteFilter.doFilter(RewriteFilter.java:226)
dataverse        |  at org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:253)
dataverse        |  at org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:211)
dataverse        |  at org.apache.catalina.core.ApplicationDispatcher.doInvoke(ApplicationDispatcher.java:816)
dataverse        |  at org.apache.catalina.core.ApplicationDispatcher.invoke(ApplicationDispatcher.java:683)
dataverse        |  at org.apache.catalina.core.ApplicationDispatcher.processRequest(ApplicationDispatcher.java:527)
dataverse        |  at org.apache.catalina.core.ApplicationDispatcher.doDispatch(ApplicationDispatcher.java:497)
dataverse        |  at org.apache.catalina.core.ApplicationDispatcher.dispatch(ApplicationDispatcher.java:379)
dataverse        |  at org.apache.catalina.core.ApplicationDispatcher.forward(ApplicationDispatcher.java:329)
dataverse        |  at edu.harvard.iq.dataverse.HomepageServlet.processRequest(HomepageServlet.java:45)
dataverse        |  at edu.harvard.iq.dataverse.HomepageServlet.doGet(HomepageServlet.java:61)
dataverse        |  at javax.servlet.http.HttpServlet.service(HttpServlet.java:645)
dataverse        |  at javax.servlet.http.HttpServlet.service(HttpServlet.java:750)
dataverse        |  at org.apache.catalina.core.StandardWrapper.service(StandardWrapper.java:1636)
dataverse        |  at org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:331)
dataverse        |  at org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:211)
dataverse        |  at org.glassfish.tyrus.servlet.TyrusServletFilter.doFilter(TyrusServletFilter.java:282)
dataverse        |  at org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:253)
dataverse        |  at org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:211)
dataverse        |  at org.ocpsoft.rewrite.servlet.RewriteFilter.doFilter(RewriteFilter.java:226)
dataverse        |  at org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:253)
dataverse        |  at org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:211)
dataverse        |  at org.apache.catalina.core.StandardWrapperValve.invoke(StandardWrapperValve.java:257)
dataverse        |  at org.apache.catalina.core.StandardContextValve.invoke(StandardContextValve.java:161)
dataverse        |  at org.apache.catalina.core.StandardPipeline.doInvoke(StandardPipeline.java:757)
dataverse        |  at org.apache.catalina.core.StandardPipeline.invoke(StandardPipeline.java:577)
dataverse        |  at com.sun.enterprise.web.WebPipeline.invoke(WebPipeline.java:99)
dataverse        |  at org.apache.catalina.core.StandardHostValve.invoke(StandardHostValve.java:158)
dataverse        |  at org.apache.catalina.connector.CoyoteAdapter.doService(CoyoteAdapter.java:371)
dataverse        |  at org.apache.catalina.connector.CoyoteAdapter.service(CoyoteAdapter.java:238)
dataverse        |  at com.sun.enterprise.v3.services.impl.ContainerMapper$HttpHandlerCallable.call(ContainerMapper.java:520)
dataverse        |  at com.sun.enterprise.v3.services.impl.ContainerMapper.service(ContainerMapper.java:217)
dataverse        |  at org.glassfish.grizzly.http.server.HttpHandler.runService(HttpHandler.java:182)
dataverse        |  at org.glassfish.grizzly.http.server.HttpHandler.doHandle(HttpHandler.java:156)
dataverse        |  at org.glassfish.grizzly.http.server.HttpServerFilter.handleRead(HttpServerFilter.java:218)
dataverse        |  at org.glassfish.grizzly.filterchain.ExecutorResolver$9.execute(ExecutorResolver.java:95)
dataverse        |  at org.glassfish.grizzly.filterchain.DefaultFilterChain.executeFilter(DefaultFilterChain.java:260)
dataverse        |  at org.glassfish.grizzly.filterchain.DefaultFilterChain.executeChainPart(DefaultFilterChain.java:177)
dataverse        |  at org.glassfish.grizzly.filterchain.DefaultFilterChain.execute(DefaultFilterChain.java:109)
dataverse        |  at org.glassfish.grizzly.filterchain.DefaultFilterChain.process(DefaultFilterChain.java:88)
dataverse        |  at org.glassfish.grizzly.ProcessorExecutor.execute(ProcessorExecutor.java:53)
dataverse        |  at org.glassfish.grizzly.nio.transport.TCPNIOTransport.fireIOEvent(TCPNIOTransport.java:524)
dataverse        |  at org.glassfish.grizzly.strategies.AbstractIOStrategy.fireIOEvent(AbstractIOStrategy.java:89)
dataverse        |  at org.glassfish.grizzly.strategies.WorkerThreadIOStrategy.run0(WorkerThreadIOStrategy.java:94)
dataverse        |  at org.glassfish.grizzly.strategies.WorkerThreadIOStrategy.access$100(WorkerThreadIOStrategy.java:33)
dataverse        |  at org.glassfish.grizzly.strategies.WorkerThreadIOStrategy$WorkerThreadRunnable.run(WorkerThreadIOStrategy.java:114)
dataverse        |  at org.glassfish.grizzly.threadpool.AbstractThreadPool$Worker.doWork(AbstractThreadPool.java:569)
dataverse        |  at org.glassfish.grizzly.threadpool.AbstractThreadPool$Worker.run(AbstractThreadPool.java:549)
dataverse        |  at java.base/java.lang.Thread.run(Thread.java:834)
dataverse        | |#]
dataverse        | 
dataverse        | [#|2022-10-26T14:27:59.704+0000|WARNING|Payara 5.2021.1|javax.enterprise.web|_ThreadID=102;_ThreadName=http-thread-pool::http-listener-1(5);_TimeMillis=1666794479704;_LevelValue=900;|
dataverse        |   StandardWrapperValve[HomepageServlet]: Servlet.service() for servlet HomepageServlet threw exception
dataverse        | java.lang.NullPointerException
dataverse        |  at edu.harvard.iq.dataverse.search.SearchServiceBean.search(SearchServiceBean.java:353)
dataverse        |  at java.base/jdk.internal.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
dataverse        |  at java.base/jdk.internal.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62)
dataverse        |  at java.base/jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
dataverse        |  at java.base/java.lang.reflect.Method.invoke(Method.java:566)
dataverse        |  at org.glassfish.ejb.security.application.EJBSecurityManager.runMethod(EJBSecurityManager.java:588)
dataverse        |  at org.glassfish.ejb.security.application.EJBSecurityManager.invoke(EJBSecurityManager.java:408)
dataverse        |  at com.sun.ejb.containers.BaseContainer.invokeBeanMethod(BaseContainer.java:4826)
dataverse        |  at com.sun.ejb.EjbInvocation.invokeBeanMethod(EjbInvocation.java:665)
dataverse        |  at com.sun.ejb.containers.interceptors.AroundInvokeChainImpl.invokeNext(InterceptorManager.java:834)
dataverse        |  at com.sun.ejb.EjbInvocation.proceed(EjbInvocation.java:615)
dataverse        |  at com.sun.ejb.containers.interceptors.SystemInterceptorProxy.doCall(SystemInterceptorProxy.java:163)
dataverse        |  at com.sun.ejb.containers.interceptors.SystemInterceptorProxy.aroundInvoke(SystemInterceptorProxy.java:140)
dataverse        |  at jdk.internal.reflect.GeneratedMethodAccessor246.invoke(Unknown Source)
dataverse        |  at java.base/jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
dataverse        |  at java.base/java.lang.reflect.Method.invoke(Method.java:566)
dataverse        |  at com.sun.ejb.containers.interceptors.AroundInvokeInterceptor.intercept(InterceptorManager.java:888)
dataverse        |  at com.sun.ejb.containers.interceptors.AroundInvokeChainImpl.invokeNext(InterceptorManager.java:833)
dataverse        |  at com.sun.ejb.EjbInvocation.proceed(EjbInvocation.java:615)
dataverse        |  at org.jboss.weld.module.ejb.AbstractEJBRequestScopeActivationInterceptor.aroundInvoke(AbstractEJBRequestScopeActivationInterceptor.java:72)
dataverse        |  at org.jboss.weld.module.ejb.SessionBeanInterceptor.aroundInvoke(SessionBeanInterceptor.java:52)
dataverse        |  at jdk.internal.reflect.GeneratedMethodAccessor243.invoke(Unknown Source)
dataverse        |  at java.base/jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
dataverse        |  at java.base/java.lang.reflect.Method.invoke(Method.java:566)
dataverse        |  at com.sun.ejb.containers.interceptors.AroundInvokeInterceptor.intercept(InterceptorManager.java:888)
dataverse        |  at com.sun.ejb.containers.interceptors.AroundInvokeChainImpl.invokeNext(InterceptorManager.java:833)
dataverse        |  at com.sun.ejb.containers.interceptors.InterceptorManager.intercept(InterceptorManager.java:375)
dataverse        |  at com.sun.ejb.containers.BaseContainer.__intercept(BaseContainer.java:4798)
dataverse        |  at com.sun.ejb.containers.BaseContainer.intercept(BaseContainer.java:4786)
dataverse        |  at com.sun.ejb.containers.EJBLocalObjectInvocationHandler.invoke(EJBLocalObjectInvocationHandler.java:212)
dataverse        |  at com.sun.ejb.containers.EJBLocalObjectInvocationHandlerDelegate.invoke(EJBLocalObjectInvocationHandlerDelegate.java:90)
dataverse        |  at com.sun.proxy.$Proxy568.search(Unknown Source)
dataverse        |  at edu.harvard.iq.dataverse.search.__EJB31_Generated__SearchServiceBean__Intf____Bean__.search(Unknown Source)
dataverse        |  at edu.harvard.iq.dataverse.search.SearchIncludeFragment.search(SearchIncludeFragment.java:357)
dataverse        |  at edu.harvard.iq.dataverse.search.SearchIncludeFragment.search(SearchIncludeFragment.java:220)
dataverse        |  at java.base/jdk.internal.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
dataverse        |  at java.base/jdk.internal.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62)
dataverse        |  at java.base/jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
dataverse        |  at java.base/java.lang.reflect.Method.invoke(Method.java:566)
dataverse        |  at javax.el.ELUtil.invokeMethod(ELUtil.java:239)
dataverse        |  at javax.el.BeanELResolver.invoke(BeanELResolver.java:440)
dataverse        |  at javax.el.CompositeELResolver.invoke(CompositeELResolver.java:198)
dataverse        |  at com.sun.el.parser.AstValue.invoke(AstValue.java:257)
dataverse        |  at com.sun.el.MethodExpressionImpl.invoke(MethodExpressionImpl.java:237)
dataverse        |  at org.jboss.weld.module.web.util.el.ForwardingMethodExpression.invoke(ForwardingMethodExpression.java:40)
dataverse        |  at org.jboss.weld.module.web.el.WeldMethodExpression.invoke(WeldMethodExpression.java:50)
dataverse        |  at com.sun.faces.facelets.el.TagMethodExpression.invoke(TagMethodExpression.java:65)
dataverse        |  at com.sun.faces.application.MethodBindingMethodExpressionAdapter.invoke(MethodBindingMethodExpressionAdapter.java:66)
dataverse        |  at com.sun.faces.application.ActionListenerImpl.getNavigationOutcome(ActionListenerImpl.java:82)
dataverse        |  at com.sun.faces.application.ActionListenerImpl.processAction(ActionListenerImpl.java:71)
dataverse        |  at javax.faces.component.UIViewAction.broadcast(UIViewAction.java:548)
dataverse        |  at javax.faces.component.UIViewRoot.broadcastEvents(UIViewRoot.java:847)
dataverse        |  at javax.faces.component.UIViewRoot.processApplication(UIViewRoot.java:1396)
dataverse        |  at com.sun.faces.lifecycle.InvokeApplicationPhase.execute(InvokeApplicationPhase.java:58)
dataverse        |  at com.sun.faces.lifecycle.Phase.doPhase(Phase.java:76)
dataverse        |  at com.sun.faces.lifecycle.LifecycleImpl.execute(LifecycleImpl.java:177)
dataverse        |  at javax.faces.webapp.FacesServlet.executeLifecyle(FacesServlet.java:707)
dataverse        |  at javax.faces.webapp.FacesServlet.service(FacesServlet.java:451)
dataverse        |  at org.apache.catalina.core.StandardWrapper.service(StandardWrapper.java:1636)
dataverse        |  at org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:331)
dataverse        |  at org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:211)
dataverse        |  at org.ocpsoft.rewrite.servlet.RewriteFilter.doFilter(RewriteFilter.java:226)
dataverse        |  at org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:253)
dataverse        |  at org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:211)
dataverse        |  at org.apache.catalina.core.ApplicationDispatcher.doInvoke(ApplicationDispatcher.java:816)
dataverse        |  at org.apache.catalina.core.ApplicationDispatcher.invoke(ApplicationDispatcher.java:683)
dataverse        |  at org.apache.catalina.core.ApplicationDispatcher.processRequest(ApplicationDispatcher.java:527)
dataverse        |  at org.apache.catalina.core.ApplicationDispatcher.doDispatch(ApplicationDispatcher.java:497)
dataverse        |  at org.apache.catalina.core.ApplicationDispatcher.dispatch(ApplicationDispatcher.java:379)
dataverse        |  at org.apache.catalina.core.ApplicationDispatcher.forward(ApplicationDispatcher.java:329)
dataverse        |  at edu.harvard.iq.dataverse.HomepageServlet.processRequest(HomepageServlet.java:45)
dataverse        |  at edu.harvard.iq.dataverse.HomepageServlet.doGet(HomepageServlet.java:61)
dataverse        |  at javax.servlet.http.HttpServlet.service(HttpServlet.java:645)
dataverse        |  at javax.servlet.http.HttpServlet.service(HttpServlet.java:750)
dataverse        |  at org.apache.catalina.core.StandardWrapper.service(StandardWrapper.java:1636)
dataverse        |  at org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:331)
dataverse        |  at org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:211)
dataverse        |  at org.glassfish.tyrus.servlet.TyrusServletFilter.doFilter(TyrusServletFilter.java:282)
dataverse        |  at org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:253)
dataverse        |  at org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:211)
dataverse        |  at org.ocpsoft.rewrite.servlet.RewriteFilter.doFilter(RewriteFilter.java:226)
dataverse        |  at org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:253)
dataverse        |  at org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:211)
dataverse        |  at org.apache.catalina.core.StandardWrapperValve.invoke(StandardWrapperValve.java:257)
dataverse        |  at org.apache.catalina.core.StandardContextValve.invoke(StandardContextValve.java:161)
dataverse        |  at org.apache.catalina.core.StandardPipeline.doInvoke(StandardPipeline.java:757)
dataverse        |  at org.apache.catalina.core.StandardPipeline.invoke(StandardPipeline.java:577)
dataverse        |  at com.sun.enterprise.web.WebPipeline.invoke(WebPipeline.java:99)
dataverse        |  at org.apache.catalina.core.StandardHostValve.invoke(StandardHostValve.java:158)
dataverse        |  at org.apache.catalina.connector.CoyoteAdapter.doService(CoyoteAdapter.java:371)
dataverse        |  at org.apache.catalina.connector.CoyoteAdapter.service(CoyoteAdapter.java:238)
dataverse        |  at com.sun.enterprise.v3.services.impl.ContainerMapper$HttpHandlerCallable.call(ContainerMapper.java:520)
dataverse        |  at com.sun.enterprise.v3.services.impl.ContainerMapper.service(ContainerMapper.java:217)
dataverse        |  at org.glassfish.grizzly.http.server.HttpHandler.runService(HttpHandler.java:182)
dataverse        |  at org.glassfish.grizzly.http.server.HttpHandler.doHandle(HttpHandler.java:156)
dataverse        |  at org.glassfish.grizzly.http.server.HttpServerFilter.handleRead(HttpServerFilter.java:218)
dataverse        |  at org.glassfish.grizzly.filterchain.ExecutorResolver$9.execute(ExecutorResolver.java:95)
dataverse        |  at org.glassfish.grizzly.filterchain.DefaultFilterChain.executeFilter(DefaultFilterChain.java:260)
dataverse        |  at org.glassfish.grizzly.filterchain.DefaultFilterChain.executeChainPart(DefaultFilterChain.java:177)
dataverse        |  at org.glassfish.grizzly.filterchain.DefaultFilterChain.execute(DefaultFilterChain.java:109)
dataverse        |  at org.glassfish.grizzly.filterchain.DefaultFilterChain.process(DefaultFilterChain.java:88)
dataverse        |  at org.glassfish.grizzly.ProcessorExecutor.execute(ProcessorExecutor.java:53)
dataverse        |  at org.glassfish.grizzly.nio.transport.TCPNIOTransport.fireIOEvent(TCPNIOTransport.java:524)
dataverse        |  at org.glassfish.grizzly.strategies.AbstractIOStrategy.fireIOEvent(AbstractIOStrategy.java:89)
dataverse        |  at org.glassfish.grizzly.strategies.WorkerThreadIOStrategy.run0(WorkerThreadIOStrategy.java:94)
dataverse        |  at org.glassfish.grizzly.strategies.WorkerThreadIOStrategy.access$100(WorkerThreadIOStrategy.java:33)
dataverse        |  at org.glassfish.grizzly.strategies.WorkerThreadIOStrategy$WorkerThreadRunnable.run(WorkerThreadIOStrategy.java:114)
dataverse        |  at org.glassfish.grizzly.threadpool.AbstractThreadPool$Worker.doWork(AbstractThreadPool.java:569)
dataverse        |  at org.glassfish.grizzly.threadpool.AbstractThreadPool$Worker.run(AbstractThreadPool.java:549)
dataverse        |  at java.base/java.lang.Thread.run(Thread.java:834)
dataverse        | |#]
dataverse        |

I would be grateful for any hint on how to fix this!

4tikhonov commented 2 years ago

Dataverse 5.11 has some problems, try to upgrade to 5.11.1

transfluxus commented 2 years ago

I think that upgrade happened automatically, but I will check again tomorrow. thanks for the quick response!

4tikhonov commented 2 years ago

Just for your information, we do restart of Dataverse twice during deployment process to apply custom XHTML templates. So there is possibility that you've got caught in the middle of the second start.

transfluxus commented 2 years ago

I just checked, and the version was 5.11.1 Maybe it's related to an error that I had during startup: 

postgres         | PostgreSQL Database directory appears to contain a database; Skipping initialization
postgres         | 
postgres         | 2022-10-28 10:39:33.423 UTC [1] FATAL:  data directory "/var/lib/postgresql/data" has wrong ownership
postgres         | 2022-10-28 10:39:33.423 UTC [1] HINT:  The server must be started by the user that owns the data directory.

which I could fix by replacing in the compose.yml: - ${LOCAL_STORAGE}/database-data:/var/lib/postgresql/data/ # persist data even if container shuts down with - /var/lib/postgresql/data/

btw. I am on Ubuntu (all I find on the web on this problem is about windows)...