Illumina / ExpansionHunter

A tool for estimating repeat sizes
Other
182 stars 51 forks source link

long time between the end of genotyping and the start of writing output #196

Open WeiCSong opened 2 months ago

WeiCSong commented 2 months ago

Hi, when using EH seeking mode, i found that the time period between the end of genotyping and the start of writing output is highly variable:

sample1: 2024-08-25T10:18:20,[Analyzing chr21_38920324_38920418_T] 2024-08-25T10:45:03,[Writing output to disk]

sample2: 2024-08-25T13:12:49,[Analyzing chr21_38920324_38920418_T] 2024-08-26T08:55:58,[Writing output to disk]

looking at the output, both samples seems normal and the file size are comparable, and i'm not sure why the second sample has a very long time before writing the output. Do you have any suggestion? thank you very much for your help.