Building variant from bed file

[jawad9-11]

i have a catalogue in the form of bed file look like this: chr1 12061 12071 5 GGAGT chr1 14661 14673 6 GTCTGG chr1 14709 14722 6 GTCCTC chr1 14734 14741 3 GCT chr1 15241 15255 6 GGGCCA chr1 15384 15395 6 GCAGGC chr1 15614 15624 4 CAGG now i want to create a cataloge in json format. can you explain to me like LocusId: "is it gene name" so first i have to annotate the file or what? can you explain the work path to me? Thank You

[andreasssh]

You can easily convert BED file to JSON via this webpage or use bed_to_catalog.py from this repository

[jawad9-11]

You can easily convert BED file to JSON via this webpage or use bed_to_catalog.py from this repository

Thank you for your answer but I want to ask as you have named the locus id as a gene name. but there are also intergenic regions can you tell me what should to do with them or just name them like this : LocusId": "chr10-100000049-100000054