This PR was automatically created by Snyk using the credentials of a real user.
Snyk has created this PR to fix one or more vulnerable packages in the `pip` dependencies of this project.
#### Changes included in this PR
- Changes to the following files to upgrade the vulnerable dependencies to a fixed version:
- requirements.txt
⚠️ Warning
```
weasel 0.3.4 has requirement typer<0.10.0,>=0.3.0, but you have typer 0.12.3.
wasabi 1.1.2 has requirement typing-extensions<4.5.0,>=3.7.4.1; python_version < "3.8", but you have typing-extensions 4.7.1.
thinc 8.2.3 has requirement typing-extensions<4.5.0,>=3.7.4.1; python_version < "3.8", but you have typing-extensions 4.7.1.
spacy 3.7.4 has requirement typer<0.10.0,>=0.3.0, but you have typer 0.12.3.
spacy 3.7.4 has requirement typing-extensions<4.5.0,>=3.7.4.1; python_version < "3.8", but you have typing-extensions 4.7.1.
scikit-learn 1.0.2 requires scipy, which is not installed.
confection 0.1.4 has requirement typing-extensions<4.5.0,>=3.7.4.1; python_version < "3.8", but you have typing-extensions 4.7.1.
```
#### Vulnerabilities that will be fixed
##### By pinning:
Severity | Priority Score (*) | Issue | Upgrade | Breaking Change | Exploit Maturity
:-------------------------:|-------------------------|:-------------------------|:-------------------------|:-------------------------|:-------------------------
 | **811/1000** **Why?** Proof of Concept exploit, Has a fix available, CVSS 9.8 | Arbitrary Code Execution [SNYK-PYTHON-JOBLIB-3027033](https://snyk.io/vuln/SNYK-PYTHON-JOBLIB-3027033) | `joblib:` `0.14.1 -> 1.1.1` | No | Proof of Concept
 | **479/1000** **Why?** Has a fix available, CVSS 5.3 | Regular Expression Denial of Service (ReDoS) [SNYK-PYTHON-NLTK-1053952](https://snyk.io/vuln/SNYK-PYTHON-NLTK-1053952) | `nltk:` `3.5 -> 3.8.1` | No | No Known Exploit
 | **479/1000** **Why?** Has a fix available, CVSS 5.3 | Regular Expression Denial of Service (ReDoS) [SNYK-PYTHON-NLTK-1660190](https://snyk.io/vuln/SNYK-PYTHON-NLTK-1660190) | `nltk:` `3.5 -> 3.8.1` | No | No Known Exploit
 | **696/1000** **Why?** Proof of Concept exploit, Has a fix available, CVSS 7.5 | Regular Expression Denial of Service (ReDoS) [SNYK-PYTHON-NLTK-1932014](https://snyk.io/vuln/SNYK-PYTHON-NLTK-1932014) | `nltk:` `3.5 -> 3.8.1` | No | Proof of Concept
 | **479/1000** **Why?** Has a fix available, CVSS 5.3 | Regular Expression Denial of Service (ReDoS) [SNYK-PYTHON-NLTK-2313655](https://snyk.io/vuln/SNYK-PYTHON-NLTK-2313655) | `nltk:` `3.5 -> 3.8.1` | No | No Known Exploit
 | **761/1000** **Why?** Proof of Concept exploit, Has a fix available, CVSS 8.8 | Remote Code Execution (RCE) [SNYK-PYTHON-NLTK-5926697](https://snyk.io/vuln/SNYK-PYTHON-NLTK-5926697) | `nltk:` `3.5 -> 3.8.1` | No | Proof of Concept
 | **556/1000** **Why?** Proof of Concept exploit, Has a fix available, CVSS 4.7 | Cross-site Scripting (XSS) [SNYK-PYTHON-NLTK-5926698](https://snyk.io/vuln/SNYK-PYTHON-NLTK-5926698) | `nltk:` `3.5 -> 3.8.1` | No | Proof of Concept
 | **506/1000** **Why?** Proof of Concept exploit, Has a fix available, CVSS 3.7 | NULL Pointer Dereference [SNYK-PYTHON-NUMPY-2321964](https://snyk.io/vuln/SNYK-PYTHON-NUMPY-2321964) | `numpy:` `1.16.6 -> 1.22.2` | No | Proof of Concept
 | **399/1000** **Why?** Has a fix available, CVSS 3.7 | Buffer Overflow [SNYK-PYTHON-NUMPY-2321966](https://snyk.io/vuln/SNYK-PYTHON-NUMPY-2321966) | `numpy:` `1.16.6 -> 1.22.2` | No | No Known Exploit
 | **506/1000** **Why?** Proof of Concept exploit, Has a fix available, CVSS 3.7 | Buffer Overflow [SNYK-PYTHON-NUMPY-2321969](https://snyk.io/vuln/SNYK-PYTHON-NUMPY-2321969) | `numpy:` `1.16.6 -> 1.22.2` | No | Proof of Concept
 | **506/1000** **Why?** Proof of Concept exploit, Has a fix available, CVSS 3.7 | Denial of Service (DoS) [SNYK-PYTHON-NUMPY-2321970](https://snyk.io/vuln/SNYK-PYTHON-NUMPY-2321970) | `numpy:` `1.16.6 -> 1.22.2` | No | Proof of Concept
 | **489/1000** **Why?** Has a fix available, CVSS 5.5 | Denial of Service (DoS) [SNYK-PYTHON-SCIPY-5756497](https://snyk.io/vuln/SNYK-PYTHON-SCIPY-5756497) | `scipy:` `1.2.3 -> 1.10.0rc1` | No | No Known Exploit
 | **686/1000** **Why?** Proof of Concept exploit, Has a fix available, CVSS 7.3 | Use After Free [SNYK-PYTHON-SCIPY-5759266](https://snyk.io/vuln/SNYK-PYTHON-SCIPY-5759266) | `scipy:` `1.2.3 -> 1.10.0rc1` | No | Proof of Concept
 | **633/1000** **Why?** Proof of Concept exploit, Recently disclosed, Has a fix available, CVSS 4.8 | Injection [SNYK-PYTHON-TQDM-6807582](https://snyk.io/vuln/SNYK-PYTHON-TQDM-6807582) | `tqdm:` `4.64.1 -> 4.66.3` | No | Proof of Concept
(*) Note that the real score may have changed since the PR was raised.
Some vulnerabilities couldn't be fully fixed and so Snyk will still find them when the project is tested again. This may be because the vulnerability existed within more than one direct dependency, but not all of the affected dependencies could be upgraded.
Check the changes in this PR to ensure they won't cause issues with your project.
------------
**Note:** *You are seeing this because you or someone else with access to this repository has authorized Snyk to open fix PRs.*
For more information:
🧐 [View latest project report](https://app.snyk.io/org/indico-data/project/5ad13162-4745-48ee-b4fd-b49545226143?utm_source=github&utm_medium=referral&page=fix-pr)
🛠 [Adjust project settings](https://app.snyk.io/org/indico-data/project/5ad13162-4745-48ee-b4fd-b49545226143?utm_source=github&utm_medium=referral&page=fix-pr/settings)
📚 [Read more about Snyk's upgrade and patch logic](https://support.snyk.io/hc/en-us/articles/360003891078-Snyk-patches-to-fix-vulnerabilities)
[//]: # (snyk:metadata:{"prId":"0f0a2d9d-14c0-4906-a5a3-a8dcdf9ed2e6","prPublicId":"0f0a2d9d-14c0-4906-a5a3-a8dcdf9ed2e6","dependencies":[{"name":"joblib","from":"0.14.1","to":"1.1.1"},{"name":"nltk","from":"3.5","to":"3.8.1"},{"name":"numpy","from":"1.16.6","to":"1.22.2"},{"name":"scipy","from":"1.2.3","to":"1.10.0rc1"},{"name":"tqdm","from":"4.64.1","to":"4.66.3"}],"packageManager":"pip","projectPublicId":"5ad13162-4745-48ee-b4fd-b49545226143","projectUrl":"https://app.snyk.io/org/indico-data/project/5ad13162-4745-48ee-b4fd-b49545226143?utm_source=github&utm_medium=referral&page=fix-pr","type":"auto","patch":[],"vulns":["SNYK-PYTHON-JOBLIB-3027033","SNYK-PYTHON-NLTK-1053952","SNYK-PYTHON-NLTK-1660190","SNYK-PYTHON-NLTK-1932014","SNYK-PYTHON-NLTK-2313655","SNYK-PYTHON-NLTK-5926697","SNYK-PYTHON-NLTK-5926698","SNYK-PYTHON-NUMPY-2321969","SNYK-PYTHON-NUMPY-2321964","SNYK-PYTHON-NUMPY-2321966","SNYK-PYTHON-NUMPY-2321970","SNYK-PYTHON-SCIPY-5756497","SNYK-PYTHON-SCIPY-5759266","SNYK-PYTHON-TQDM-6807582"],"upgrade":[],"isBreakingChange":false,"env":"prod","prType":"fix","templateVariants":["pr-warning-shown","priorityScore"],"priorityScoreList":[811,479,479,696,479,761,556,506,506,399,506,489,686,633],"remediationStrategy":"vuln"})
---
**Learn how to fix vulnerabilities with free interactive lessons:**
🦉 [Arbitrary Code Execution](https://learn.snyk.io/lesson/malicious-code-injection/?loc=fix-pr)
🦉 [Regular Expression Denial of Service (ReDoS)](https://learn.snyk.io/lesson/redos/?loc=fix-pr)
🦉 [Cross-site Scripting (XSS)](https://learn.snyk.io/lesson/xss/?loc=fix-pr)
🦉 [More lessons are available in Snyk Learn](https://learn.snyk.io/?loc=fix-pr)
This PR was automatically created by Snyk using the credentials of a real user.
Snyk has created this PR to fix one or more vulnerable packages in the `pip` dependencies of this project.
#### Changes included in this PR - Changes to the following files to upgrade the vulnerable dependencies to a fixed version: - requirements.txt⚠️ Warning
``` weasel 0.3.4 has requirement typer<0.10.0,>=0.3.0, but you have typer 0.12.3. wasabi 1.1.2 has requirement typing-extensions<4.5.0,>=3.7.4.1; python_version < "3.8", but you have typing-extensions 4.7.1. thinc 8.2.3 has requirement typing-extensions<4.5.0,>=3.7.4.1; python_version < "3.8", but you have typing-extensions 4.7.1. spacy 3.7.4 has requirement typer<0.10.0,>=0.3.0, but you have typer 0.12.3. spacy 3.7.4 has requirement typing-extensions<4.5.0,>=3.7.4.1; python_version < "3.8", but you have typing-extensions 4.7.1. scikit-learn 1.0.2 requires scipy, which is not installed. confection 0.1.4 has requirement typing-extensions<4.5.0,>=3.7.4.1; python_version < "3.8", but you have typing-extensions 4.7.1. ```**Why?** Proof of Concept exploit, Has a fix available, CVSS 9.8 | Arbitrary Code Execution
[SNYK-PYTHON-JOBLIB-3027033](https://snyk.io/vuln/SNYK-PYTHON-JOBLIB-3027033) | `joblib:`
`0.14.1 -> 1.1.1`
| No | Proof of Concept  | **479/1000**
**Why?** Has a fix available, CVSS 5.3 | Regular Expression Denial of Service (ReDoS)
[SNYK-PYTHON-NLTK-1053952](https://snyk.io/vuln/SNYK-PYTHON-NLTK-1053952) | `nltk:`
`3.5 -> 3.8.1`
| No | No Known Exploit  | **479/1000**
**Why?** Has a fix available, CVSS 5.3 | Regular Expression Denial of Service (ReDoS)
[SNYK-PYTHON-NLTK-1660190](https://snyk.io/vuln/SNYK-PYTHON-NLTK-1660190) | `nltk:`
`3.5 -> 3.8.1`
| No | No Known Exploit  | **696/1000**
**Why?** Proof of Concept exploit, Has a fix available, CVSS 7.5 | Regular Expression Denial of Service (ReDoS)
[SNYK-PYTHON-NLTK-1932014](https://snyk.io/vuln/SNYK-PYTHON-NLTK-1932014) | `nltk:`
`3.5 -> 3.8.1`
| No | Proof of Concept  | **479/1000**
**Why?** Has a fix available, CVSS 5.3 | Regular Expression Denial of Service (ReDoS)
[SNYK-PYTHON-NLTK-2313655](https://snyk.io/vuln/SNYK-PYTHON-NLTK-2313655) | `nltk:`
`3.5 -> 3.8.1`
| No | No Known Exploit  | **761/1000**
**Why?** Proof of Concept exploit, Has a fix available, CVSS 8.8 | Remote Code Execution (RCE)
[SNYK-PYTHON-NLTK-5926697](https://snyk.io/vuln/SNYK-PYTHON-NLTK-5926697) | `nltk:`
`3.5 -> 3.8.1`
| No | Proof of Concept  | **556/1000**
**Why?** Proof of Concept exploit, Has a fix available, CVSS 4.7 | Cross-site Scripting (XSS)
[SNYK-PYTHON-NLTK-5926698](https://snyk.io/vuln/SNYK-PYTHON-NLTK-5926698) | `nltk:`
`3.5 -> 3.8.1`
| No | Proof of Concept  | **506/1000**
**Why?** Proof of Concept exploit, Has a fix available, CVSS 3.7 | NULL Pointer Dereference
[SNYK-PYTHON-NUMPY-2321964](https://snyk.io/vuln/SNYK-PYTHON-NUMPY-2321964) | `numpy:`
`1.16.6 -> 1.22.2`
| No | Proof of Concept  | **399/1000**
**Why?** Has a fix available, CVSS 3.7 | Buffer Overflow
[SNYK-PYTHON-NUMPY-2321966](https://snyk.io/vuln/SNYK-PYTHON-NUMPY-2321966) | `numpy:`
`1.16.6 -> 1.22.2`
| No | No Known Exploit  | **506/1000**
**Why?** Proof of Concept exploit, Has a fix available, CVSS 3.7 | Buffer Overflow
[SNYK-PYTHON-NUMPY-2321969](https://snyk.io/vuln/SNYK-PYTHON-NUMPY-2321969) | `numpy:`
`1.16.6 -> 1.22.2`
| No | Proof of Concept  | **506/1000**
**Why?** Proof of Concept exploit, Has a fix available, CVSS 3.7 | Denial of Service (DoS)
[SNYK-PYTHON-NUMPY-2321970](https://snyk.io/vuln/SNYK-PYTHON-NUMPY-2321970) | `numpy:`
`1.16.6 -> 1.22.2`
| No | Proof of Concept  | **489/1000**
**Why?** Has a fix available, CVSS 5.5 | Denial of Service (DoS)
[SNYK-PYTHON-SCIPY-5756497](https://snyk.io/vuln/SNYK-PYTHON-SCIPY-5756497) | `scipy:`
`1.2.3 -> 1.10.0rc1`
| No | No Known Exploit  | **686/1000**
**Why?** Proof of Concept exploit, Has a fix available, CVSS 7.3 | Use After Free
[SNYK-PYTHON-SCIPY-5759266](https://snyk.io/vuln/SNYK-PYTHON-SCIPY-5759266) | `scipy:`
`1.2.3 -> 1.10.0rc1`
| No | Proof of Concept  | **633/1000**
**Why?** Proof of Concept exploit, Recently disclosed, Has a fix available, CVSS 4.8 | Injection
[SNYK-PYTHON-TQDM-6807582](https://snyk.io/vuln/SNYK-PYTHON-TQDM-6807582) | `tqdm:`
`4.64.1 -> 4.66.3`
| No | Proof of Concept (*) Note that the real score may have changed since the PR was raised. Some vulnerabilities couldn't be fully fixed and so Snyk will still find them when the project is tested again. This may be because the vulnerability existed within more than one direct dependency, but not all of the affected dependencies could be upgraded. Check the changes in this PR to ensure they won't cause issues with your project. ------------ **Note:** *You are seeing this because you or someone else with access to this repository has authorized Snyk to open fix PRs.* For more information: