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IntelLabs
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GKL
Accelerated kernel library for genomics
MIT License
105
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41
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Change Test
#214
chirayuharyan
opened
1 month ago
0
Segfault reported by GATK user
#213
lbergelson
opened
1 month ago
0
PDHMM Bug Fix: JacobianLogTable cache memory leak
#212
chirayuharyan
opened
3 months ago
0
cmake install statements for all installed libraries are wrong
#211
yurivict
opened
3 months ago
0
Redesign PDHMM tests
#210
mateuszsnowak
closed
3 months ago
0
Replace ISA-L patch with --with-pic=yes configure command.
#209
mateuszsnowak
closed
5 months ago
0
Fix building jar with Mac binaries from directory with name different than GKL.
#208
mateuszsnowak
closed
5 months ago
0
Replace ISA-L patch with --with-pic=yes configure command.
#207
mateuszsnowak
closed
5 months ago
0
Remove some unused functions
#206
mateuszsnowak
closed
6 months ago
0
Bug fixes in PDHMM
#205
chirayuharyan
closed
4 months ago
0
Update copyright year 2024
#204
mateuszsnowak
closed
7 months ago
0
Speed up compilation of C++ code using all available cores
#203
mateuszsnowak
closed
7 months ago
0
SmithWaterman result inconsistency by optimization level
#202
wook-choi
opened
8 months ago
0
PDHMM implementation added
#201
chirayuharyan
closed
9 months ago
0
GATK AVX accelerated pairHMM Segfault issue with Long reads - Consistently around the same region
#200
gokalpcelik
opened
1 year ago
0
the way of docker or apptainer install
#199
user-tq
opened
1 year ago
0
Update Known Issues.
#198
mateuszsnowak
closed
1 year ago
0
Change from using the java plugin to the java-library plugin
#197
lbergelson
closed
1 year ago
0
Sign only when publishing release JAR
#196
mateuszsnowak
closed
1 year ago
0
Update buildOnMac.sh
#195
mateuszsnowak
closed
1 year ago
0
Remove python script
#194
mateuszsnowak
closed
1 year ago
0
Update README.md
#193
mateuszsnowak
closed
1 year ago
0
Adding SECURITY.md file
#192
kdhanala
closed
1 year ago
0
Deflater.needsInput() Always returns true
#191
lechiefe
opened
1 year ago
4
Update README.md
#190
mateuszsnowak
closed
1 year ago
0
Upgrade gradle to v8.0.2
#189
ugolowic
closed
1 year ago
0
Remove unused zlib subdirectories.
#188
mateuszsnowak
closed
1 year ago
0
Segfault in the native PairHMM on certain CPU / JVM combinations
#187
droazen
opened
1 year ago
0
Update license year to 2023 and convert to SLASHSTAR_STYLE.
#186
mateuszsnowak
closed
1 year ago
0
Use requested compression level after reset call when compressing with ISA-L
#185
mateuszsnowak
closed
1 year ago
0
Update otc zlib from 1.2.11 to 1.2.13
#184
kdhanala
closed
1 year ago
1
Fix logger message in IntelDeflater.java
#183
mateuszsnowak
closed
1 year ago
0
Testng v7.5.x
#182
kdhanala
closed
1 year ago
0
Update HTSJDK version to 3.0.5
#181
mateuszsnowak
closed
1 year ago
0
Removed warning message based on issue #176
#180
kdhanala
closed
1 year ago
1
Update README.md about upcoming release
#179
kdhanala
closed
1 year ago
0
Use calloc instead of malloc when initializing ISA-L
#178
mateuszsnowak
closed
1 year ago
2
IntelDeflater intermittently fails to properly compress outputs with GKL 0.8.8
#177
droazen
closed
1 year ago
3
Confusing warning message in IntelInflater
#176
lbergelson
closed
1 year ago
1
Revert "Updating otc_zlib with intel zlib 1.2.12"
#175
kdhanala
closed
2 years ago
0
Updating otc_zlib with intel zlib 1.2.12
#174
kdhanala
closed
2 years ago
0
Does GKL support arm architecture?
#173
codeseedling
opened
2 years ago
3
Help, where is the function impl of 'compute_fp_avx512s' ?
#172
LightSun
opened
2 years ago
0
Potential memory leak observed in unusual HaplotypeCaller behavior
#171
jamesemery
opened
2 years ago
1
Release 0.8.9 is not on maven
#170
nh13
closed
1 year ago
3
`smithWatermanBackTrack` is being shared between AVX2 and AVX-512
#169
philipc
opened
2 years ago
2
Replace log4j with commons-logging.
#168
tfenne
closed
2 years ago
5
log4j v2.17 update
#167
Kmannth
closed
2 years ago
0
Move to log4j 2.16
#166
Kmannth
closed
2 years ago
1
GKL should ideally use commons-logging or similar instead of log4j
#165
tfenne
closed
1 year ago
2
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