search

JBerthelier / PiRATE

PiRATE (Pipeline to Retrieve and Annotate Transposable Elements)
http://doi.org/10.17882/51795
18 stars 5 forks source link

Encountered error in Hmmer #48

Open Lukanyo12 opened 4 years ago

Lukanyo12 commented 4 years ago

Hello Jeremy, I encountered this error during my analysis with TE-HMMER.

Fatal error: Exit code 134 () Translate nucleic acid sequences Fatal exception ( source file p7_alidisplay .c , line 729): backconverted subseq didnt end at expected length (scaffold255_4/PiRATEdb_Academ_HEL_NA) /home/jeremy/galaxy/database/jobs_directory/001/1961/tool_script . sh : ligne 9 : 10158 Abandon (core dumped) hmm search -A result _hmmer . stock / home/jeremy/galaxy/tools/Pipeline/Hmmer/PiRATE_hmmer.hmm genome_prot. fa > /home/jeremy/galaxy/database/files/003/dataset_3875. dat

JBerthelier commented 4 years ago

Dear Lukanyo, Does TE-hmmer gave you an output or only this error? Could you retry with half sequences as input?

Best

Jeremy

Drsuch13 commented 4 years ago

I think the problem is in my fasta file, because when I used another genome FASTA file, it worked perfecly. I will definately try with half sequences for this one. Thank you!