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JMMC-OpenDev / oimaging-uws-server

GNU General Public License v3.0
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GDL WISARD build error #4

Closed FerreolS closed 2 years ago

FerreolS commented 3 years ago

docker-build crash during compilation of GDL (can't find the log). I had to set DO_WISARD=0

gmella commented 3 years ago

Ok. I guess that we do not rely on specific version/tag so it may depend on build time... I will redo the check now and come back with more report information.

gmella commented 3 years ago

I just removed all my oiservices images and build finished properly:

$ docker images oiservices 
REPOSITORY   TAG       IMAGE ID       CREATED         SIZE
oiservices   3.5.0a    81e59c7f644a   6 minutes ago   573MB
$  docker image rmi 81e59c7f644a
Untagged: oiservices:3.5.0a
Deleted: sha256:631d1eccbf1f3baacd6b403e08f6e0c8e611c19744efb8a8e42ae1f0db8fd9d4
...
$ make
...
Successfully tagged oiservices:3.5.0a
docker tag oiservices:3.5.0a oiservices:latest

Could you remove your image and start again ? or copy/paste the build log if this does not fix your issue

FerreolS commented 3 years ago

I have still the issue: here are the lines about GDL

#9 54.71 + git clone --depth 1 https://github.com/gnudatalanguage/gdl.git
#9 54.71 Cloning into 'gdl'...
#9 62.54 + [ 2 -gt 1 ]
#9 62.54 + USE_OPENMP=ON
#9 62.54 + export CMAKE_ARGS=-DOPENMP=ON -DEDITLINE=ON -DREADLINE=ON -DFFTW=ON -DEIGEN3=ON -DEIGEN3DIR=/usr/local/include/eigen3/ -DX11=OFF
#9 62.54 + export CMAKE_ARGS=-DOPENMP=ON -DEDITLINE=ON -DREADLINE=ON -DFFTW=ON -DEIGEN3=ON -DEIGEN3DIR=/usr/local/include/eigen3/ -DX11=OFF -DGRAPHICSMAGICK=OFF -DMAGICK=OFF -DWXWIDGETS=OFF -DTIFF=OFF -DNETCDF=OFF -DHDF=OFF -DHDF5=OFF -DPYTHON=OFF
#9 62.54 + export CMAKE_ARGS=-DOPENMP=ON -DEDITLINE=ON -DREADLINE=ON -DFFTW=ON -DEIGEN3=ON -DEIGEN3DIR=/usr/local/include/eigen3/ -DX11=OFF -DGRAPHICSMAGICK=OFF -DMAGICK=OFF -DWXWIDGETS=OFF -DTIFF=OFF -DNETCDF=OFF -DHDF=OFF -DHDF5=OFF -DPYTHON=OFF -DLIBPROJ=OFF -DSHAPELIB=OFF -DEXPAT=OFF -DUDUNITS2=OFF -DGRIB=OFF -DGLPK=OFF -DINTERACTIVE_GRAPHICS=OFF -DQHULL=OFF
#9 62.54 + cd /opt/gdl
#9 62.54 + mkdir build
#9 62.55 + cd build
#9 62.55 + cmake -DCMAKE_BUILD_TYPE=Release -DCMAKE_C_FLAGS_RELEASE=-O3 -march=broadwell -mfpmath=sse -fomit-frame-pointer -fstrict-aliasing -DNDEBUG -pipe -DCMAKE_CXX_FLAGS_RELEASE=-O3 -march=broadwell -mfpmath=sse -fomit-frame-pointer -fstrict-aliasing -DNDEBUG -pipe -DOPENMP=ON -DEDITLINE=ON -DREADLINE=ON -DFFTW=ON -DEIGEN3=ON -DEIGEN3DIR=/usr/local/include/eigen3/ -DX11=OFF -DGRAPHICSMAGICK=OFF -DMAGICK=OFF -DWXWIDGETS=OFF -DTIFF=OFF -DNETCDF=OFF -DHDF=OFF -DHDF5=OFF -DPYTHON=OFF -DLIBPROJ=OFF -DSHAPELIB=OFF -DEXPAT=OFF -DUDUNITS2=OFF -DGRIB=OFF -DGLPK=OFF -DINTERACTIVE_GRAPHICS=OFF -DQHULL=OFF ..
#9 62.60 -- The C compiler identification is GNU 10.2.1
#9 62.65 -- The CXX compiler identification is GNU 10.2.1
#9 62.66 -- Detecting C compiler ABI info
#9 62.73 -- Detecting C compiler ABI info - done
#9 62.74 -- Check for working C compiler: /usr/bin/cc - skipped
#9 62.75 -- Detecting C compile features
#9 62.75 -- Detecting C compile features - done
#9 62.75 -- Detecting CXX compiler ABI info
#9 62.83 -- Detecting CXX compiler ABI info - done
#9 62.84 -- Check for working CXX compiler: /usr/bin/c++ - skipped
#9 62.84 -- Detecting CXX compile features
#9 62.84 -- Detecting CXX compile features - done
#9 62.85 -- Could NOT find PkgConfig (missing: PKG_CONFIG_EXECUTABLE) 
#9 62.85 -- Check if the system is big endian
#9 62.85 -- Searching 16 bit integer
#9 62.85 -- Looking for sys/types.h
#9 62.92 -- Looking for sys/types.h - found
#9 62.92 -- Looking for stdint.h
#9 62.99 -- Looking for stdint.h - found
#9 62.99 -- Looking for stddef.h
#9 63.06 -- Looking for stddef.h - found
#9 63.06 -- Check size of unsigned short
#9 63.13 -- Check size of unsigned short - done
#9 63.13 -- Searching 16 bit integer - Using unsigned short
#9 63.20 -- Check if the system is big endian - little endian
#9 63.20 -- Looking for dlopen in dl
#9 63.27 -- Looking for dlopen in dl - found
#9 63.27 -- Looking for malloc_zone_statistics
#9 63.33 -- Looking for malloc_zone_statistics - not found
#9 63.33 -- Looking for sbrk
#9 63.40 -- Looking for sbrk - found
#9 63.40 -- Looking for mallinfo
#9 63.47 -- Looking for mallinfo - found
#9 63.47 -- Looking for mallinfo2
#9 63.54 -- Looking for mallinfo2 - not found
#9 63.54 -- Looking for malloc.h
#9 63.61 -- Looking for malloc.h - found
#9 63.61 -- Looking for malloc/malloc.h
#9 63.63 -- Looking for malloc/malloc.h - not found
#9 63.63 -- Looking for locale.h
#9 63.70 -- Looking for locale.h - found
#9 63.70 -- Looking for stdlib.h
#9 63.77 -- Looking for stdlib.h - found
#9 63.77 -- Looking for string.h
#9 63.84 -- Looking for string.h - found
#9 63.84 -- Looking for strings.h
#9 63.91 -- Looking for strings.h - found
#9 63.91 -- Looking for sys/stat.h
#9 63.98 -- Looking for sys/stat.h - found
#9 63.98 -- Looking for unistd.h
#9 64.05 -- Looking for unistd.h - found
#9 64.05 -- Performing Test REALLY_HAVE_EXT_STDIO_FILEBUF_H
#9 64.32 -- Performing Test REALLY_HAVE_EXT_STDIO_FILEBUF_H - Success
#9 64.32 -- INFO: will use GNU extensions for STDIO (useful for compressed I/O) since it seems accepted by your c++ compiler.
#9 64.33 -- Looking for dlfcn.h
#9 64.39 -- Looking for dlfcn.h - found
#9 64.40 -- Looking for inttypes.h
#9 64.47 -- Looking for inttypes.h - found
#9 64.47 -- Looking for nexttoward in m
#9 64.54 -- Looking for nexttoward in m - found
#9 64.54 -- Looking for mpi.h
#9 64.56 -- Looking for mpi.h - not found
#9 64.64 -- Looking for cbreak in /usr/lib/x86_64-linux-gnu/libncurses.so
#9 64.72 -- Looking for cbreak in /usr/lib/x86_64-linux-gnu/libncurses.so - found
#9 64.72 -- Looking for rl_get_screen_size in /usr/lib/x86_64-linux-gnu/libreadline.so;/usr/lib/x86_64-linux-gnu/libhistory.so
#9 64.80 -- Looking for rl_get_screen_size in /usr/lib/x86_64-linux-gnu/libreadline.so;/usr/lib/x86_64-linux-gnu/libhistory.so - found
#9 65.14 -- Looking for xdr_uint64_t in tirpc
#9 65.22 -- Looking for xdr_uint64_t in tirpc - found
#9 65.22 Use fuzzy detection for PLplot lib. (e.g. in /usr/lib)
#9 65.23 -- Warning, if you have plplot version > 5.11 and wxWidgets enabled, please read carefully file README
#9 65.23 -- Looking for c_plslabelfunc in /usr/lib/x86_64-linux-gnu/libplplot.so;/usr/lib/x86_64-linux-gnu/libplplotcxx.so
#9 65.30 -- Looking for c_plslabelfunc in /usr/lib/x86_64-linux-gnu/libplplot.so;/usr/lib/x86_64-linux-gnu/libplplotcxx.so - found
#9 65.30 -- Looking for c_plwidth in /usr/lib/x86_64-linux-gnu/libplplot.so;/usr/lib/x86_64-linux-gnu/libplplotcxx.so
#9 65.38 -- Looking for c_plwidth in /usr/lib/x86_64-linux-gnu/libplplot.so;/usr/lib/x86_64-linux-gnu/libplplotcxx.so - found
#9 65.38 -- Looking for plstrl in /usr/lib/x86_64-linux-gnu/libplplot.so;/usr/lib/x86_64-linux-gnu/libplplotcxx.so
#9 65.45 -- Looking for plstrl in /usr/lib/x86_64-linux-gnu/libplplot.so;/usr/lib/x86_64-linux-gnu/libplplotcxx.so - not found
#9 65.45 -- Using a plplot library without private functions - workarounds will be used.
#9 65.45 -- Performing Test PLPLOT_HAS_PLCALLBACK
#9 65.58 -- Performing Test PLPLOT_HAS_PLCALLBACK - Success
#9 65.60 
#9 65.60 
#9 65.60 Interactive plots: OFF
#9 65.60 Widgets support: 
#9 65.60 
#9 65.60 OpenMP support         ON (flag: -fopenmp)
#9 65.60 WxWidgets              OFF
#9 65.60 ImageMagick            OFF
#9 65.60 TIFF                   OFF
#9 65.60 GeoTIFF                OFF
#9 65.60 NetCDF                 OFF
#9 65.60 HDF4                   OFF
#9 65.60 -- Summary
#9 65.60 
#9 65.60 GDL - GNU DATA LANGUAGE [Standalone]
#9 65.60 System                 Linux-5.10.47-linuxkit
#9 65.60 Files generated        Unix Makefiles
#9 65.60 Installation prefix    /usr/local
#9 65.60 C++ compiler           /usr/bin/c++ -O3 -march=broadwell -mfpmath=sse -fomit-frame-pointer -fstrict-aliasing -DNDEBUG -pipe
#9 65.60 -- Options
#9 65.60 HDF5                   OFF
#9 65.60 FFTW                   ON (libs:/usr/lib/x86_64-linux-gnu/libfftw3.so;/usr/lib/x86_64-linux-gnu/libfftw3f.so; headers:/usr/include)
#9 65.60 MPI                    OFF
#9 65.60 PROJ                   OFF
#9 65.60 Python                 OFF
#9 65.60 UDUNITS-2              OFF
#9 65.60 EIGEN3                 ON (libs:; headers:/usr/local/include/eigen3)
#9 65.60 GRIB                   OFF
#9 65.60 QHULL                  OFF
#9 65.60 GLPK                   OFF
#9 65.60 SHAPELIB               OFF
#9 65.60 EXPAT                  OFF
#9 65.60 libpng                 ON (libs:/usr/lib/x86_64-linux-gnu/libpng.so;/usr/lib/x86_64-linux-gnu/libz.so; headers:/usr/include;/usr/include)
#9 65.60 
#9 65.60 -- Mandatory modules
#9 65.60 Plplot                 ON (libs:/usr/lib/x86_64-linux-gnu/libplplot.so;/usr/lib/x86_64-linux-gnu/libplplotcxx.so; headers:/usr/include)
#9 65.60 GNU Readline           ON (libs:/usr/lib/x86_64-linux-gnu/libreadline.so;/usr/lib/x86_64-linux-gnu/libhistory.so; headers:/usr/include)
#9 65.60 GSL                    ON (libs:/usr/lib/x86_64-linux-gnu/libgsl.so;/usr/lib/x86_64-linux-gnu/libgslcblas.so; headers:/usr/include)
#9 65.60 Zlib                   ON (libs:/usr/lib/x86_64-linux-gnu/libz.so; headers:/usr/include)
#9 65.60 (N)curses              ON (libs:/usr/lib/x86_64-linux-gnu/libncurses.so;/usr/lib/x86_64-linux-gnu/libform.so; headers:/usr/include)
#9 65.60 RPC                    ON (libs:/usr/lib/x86_64-linux-gnu/libtirpc.so; headers:/usr/include/tirpc)
#9 65.60 
#9 65.60 GDLDEV mode: OFF (use -DGDLDEV=ON to enable work-in-progress tests)
#9 65.60 
#9 65.60 -- Configuring done
#9 65.64 -- Generating done
#9 65.64 CMake Warning:
#9 65.64   Manually-specified variables were not used by the project:
#9 65.64 
#9 65.64     EDITLINE
#9 65.64 
#9 65.64 
#9 65.64 -- Build files have been written to: /opt/gdl/build
#9 65.65 + make -j 16 VERBOSE=1
#9 65.65 /usr/bin/cmake -S/opt/gdl -B/opt/gdl/build --check-build-system CMakeFiles/Makefile.cmake 0
#9 65.66 /usr/bin/cmake -E cmake_progress_start /opt/gdl/build/CMakeFiles /opt/gdl/build//CMakeFiles/progress.marks
#9 65.67 make  -f CMakeFiles/Makefile2 all
#9 65.67 make[1]: Entering directory '/opt/gdl/build'
#9 65.67 make  -f src/antlr/CMakeFiles/antlr.dir/build.make src/antlr/CMakeFiles/antlr.dir/depend
#9 65.67 make[2]: Entering directory '/opt/gdl/build'
#9 65.67 cd /opt/gdl/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /opt/gdl /opt/gdl/src/antlr /opt/gdl/build /opt/gdl/build/src/antlr /opt/gdl/build/src/antlr/CMakeFiles/antlr.dir/DependInfo.cmake --color=
#9 65.68 Dependee "/opt/gdl/build/src/antlr/CMakeFiles/antlr.dir/DependInfo.cmake" is newer than depender "/opt/gdl/build/src/antlr/CMakeFiles/antlr.dir/depend.internal".
#9 65.68 Dependee "/opt/gdl/build/src/antlr/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/opt/gdl/build/src/antlr/CMakeFiles/antlr.dir/depend.internal".
#9 65.69 Scanning dependencies of target antlr
#9 65.69 make[2]: Leaving directory '/opt/gdl/build'
#9 65.69 make  -f src/antlr/CMakeFiles/antlr.dir/build.make src/antlr/CMakeFiles/antlr.dir/build
#9 65.69 make[2]: Entering directory '/opt/gdl/build'
#9 65.70 [  0%] Building CXX object src/antlr/CMakeFiles/antlr.dir/ANTLRUtil.cpp.o
#9 65.70 [  2%] Building CXX object src/antlr/CMakeFiles/antlr.dir/ASTRefCount.cpp.o
#9 65.70 [  2%] Building CXX object src/antlr/CMakeFiles/antlr.dir/ASTNULLType.cpp.o
#9 65.70 [  2%] Building CXX object src/antlr/CMakeFiles/antlr.dir/ASTFactory.cpp.o
#9 65.70 [  2%] Building CXX object src/antlr/CMakeFiles/antlr.dir/CharBuffer.cpp.o
#9 65.70 [  2%] Building CXX object src/antlr/CMakeFiles/antlr.dir/BaseAST.cpp.o
#9 65.70 [  3%] Building CXX object src/antlr/CMakeFiles/antlr.dir/BitSet.cpp.o
#9 65.70 cd /opt/gdl/build/src/antlr && /usr/bin/c++  -I/opt/gdl/src -I/usr/include/tirpc -I/usr/local/include/eigen3 -I/opt/gdl -I/opt/gdl/src/antlr -O3 -march=broadwell -mfpmath=sse -fomit-frame-pointer -fstrict-aliasing -DNDEBUG -pipe -fPIC -std=gnu++11 -o CMakeFiles/antlr.dir/ANTLRUtil.cpp.o -c /opt/gdl/src/antlr/ANTLRUtil.cpp
#9 65.70 [  4%] Building CXX object src/antlr/CMakeFiles/antlr.dir/CharScanner.cpp.o
#9 65.70 cd /opt/gdl/build/src/antlr && /usr/bin/c++  -I/opt/gdl/src -I/usr/include/tirpc -I/usr/local/include/eigen3 -I/opt/gdl -I/opt/gdl/src/antlr -O3 -march=broadwell -mfpmath=sse -fomit-frame-pointer -fstrict-aliasing -DNDEBUG -pipe -fPIC -std=gnu++11 -o CMakeFiles/antlr.dir/ASTFactory.cpp.o -c /opt/gdl/src/antlr/ASTFactory.cpp
#9 65.70 cd /opt/gdl/build/src/antlr && /usr/bin/c++  -I/opt/gdl/src -I/usr/include/tirpc -I/usr/local/include/eigen3 -I/opt/gdl -I/opt/gdl/src/antlr -O3 -march=broadwell -mfpmath=sse -fomit-frame-pointer -fstrict-aliasing -DNDEBUG -pipe -fPIC -std=gnu++11 -o CMakeFiles/antlr.dir/ASTNULLType.cpp.o -c /opt/gdl/src/antlr/ASTNULLType.cpp
#9 65.70 cd /opt/gdl/build/src/antlr && /usr/bin/c++  -I/opt/gdl/src -I/usr/include/tirpc -I/usr/local/include/eigen3 -I/opt/gdl -I/opt/gdl/src/antlr -O3 -march=broadwell -mfpmath=sse -fomit-frame-pointer -fstrict-aliasing -DNDEBUG -pipe -fPIC -std=gnu++11 -o CMakeFiles/antlr.dir/ASTRefCount.cpp.o -c /opt/gdl/src/antlr/ASTRefCount.cpp
#9 65.70 cd /opt/gdl/build/src/antlr && /usr/bin/c++  -I/opt/gdl/src -I/usr/include/tirpc -I/usr/local/include/eigen3 -I/opt/gdl -I/opt/gdl/src/antlr -O3 -march=broadwell -mfpmath=sse -fomit-frame-pointer -fstrict-aliasing -DNDEBUG -pipe -fPIC -std=gnu++11 -o CMakeFiles/antlr.dir/BaseAST.cpp.o -c /opt/gdl/src/antlr/BaseAST.cpp
#9 65.70 cd /opt/gdl/build/src/antlr && /usr/bin/c++  -I/opt/gdl/src -I/usr/include/tirpc -I/usr/local/include/eigen3 -I/opt/gdl -I/opt/gdl/src/antlr -O3 -march=broadwell -mfpmath=sse -fomit-frame-pointer -fstrict-aliasing -DNDEBUG -pipe -fPIC -std=gnu++11 -o CMakeFiles/antlr.dir/BitSet.cpp.o -c /opt/gdl/src/antlr/BitSet.cpp
#9 65.70 cd /opt/gdl/build/src/antlr && /usr/bin/c++  -I/opt/gdl/src -I/usr/include/tirpc -I/usr/local/include/eigen3 -I/opt/gdl -I/opt/gdl/src/antlr -O3 -march=broadwell -mfpmath=sse -fomit-frame-pointer -fstrict-aliasing -DNDEBUG -pipe -fPIC -std=gnu++11 -o CMakeFiles/antlr.dir/CharBuffer.cpp.o -c /opt/gdl/src/antlr/CharBuffer.cpp
#9 65.70 cd /opt/gdl/build/src/antlr && /usr/bin/c++  -I/opt/gdl/src -I/usr/include/tirpc -I/usr/local/include/eigen3 -I/opt/gdl -I/opt/gdl/src/antlr -O3 -march=broadwell -mfpmath=sse -fomit-frame-pointer -fstrict-aliasing -DNDEBUG -pipe -fPIC -std=gnu++11 -o CMakeFiles/antlr.dir/CharScanner.cpp.o -c /opt/gdl/src/antlr/CharScanner.cpp
#9 65.71 [  4%] Building CXX object src/antlr/CMakeFiles/antlr.dir/CommonAST.cpp.o
#9 65.72 cd /opt/gdl/build/src/antlr && /usr/bin/c++  -I/opt/gdl/src -I/usr/include/tirpc -I/usr/local/include/eigen3 -I/opt/gdl -I/opt/gdl/src/antlr -O3 -march=broadwell -mfpmath=sse -fomit-frame-pointer -fstrict-aliasing -DNDEBUG -pipe -fPIC -std=gnu++11 -o CMakeFiles/antlr.dir/CommonAST.cpp.o -c /opt/gdl/src/antlr/CommonAST.cpp
#9 65.74 [  5%] Building CXX object src/antlr/CMakeFiles/antlr.dir/CommonASTWithHiddenTokens.cpp.o
#9 65.74 cd /opt/gdl/build/src/antlr && /usr/bin/c++  -I/opt/gdl/src -I/usr/include/tirpc -I/usr/local/include/eigen3 -I/opt/gdl -I/opt/gdl/src/antlr -O3 -march=broadwell -mfpmath=sse -fomit-frame-pointer -fstrict-aliasing -DNDEBUG -pipe -fPIC -std=gnu++11 -o CMakeFiles/antlr.dir/CommonASTWithHiddenTokens.cpp.o -c /opt/gdl/src/antlr/CommonASTWithHiddenTokens.cpp
#9 65.75 [  6%] Building CXX object src/antlr/CMakeFiles/antlr.dir/CommonHiddenStreamToken.cpp.o
#9 65.76 [  6%] Building CXX object src/antlr/CMakeFiles/antlr.dir/CommonToken.cpp.o
#9 65.76 cd /opt/gdl/build/src/antlr && /usr/bin/c++  -I/opt/gdl/src -I/usr/include/tirpc -I/usr/local/include/eigen3 -I/opt/gdl -I/opt/gdl/src/antlr -O3 -march=broadwell -mfpmath=sse -fomit-frame-pointer -fstrict-aliasing -DNDEBUG -pipe -fPIC -std=gnu++11 -o CMakeFiles/antlr.dir/CommonHiddenStreamToken.cpp.o -c /opt/gdl/src/antlr/CommonHiddenStreamToken.cpp
#9 65.77 cd /opt/gdl/build/src/antlr && /usr/bin/c++  -I/opt/gdl/src -I/usr/include/tirpc -I/usr/local/include/eigen3 -I/opt/gdl -I/opt/gdl/src/antlr -O3 -march=broadwell -mfpmath=sse -fomit-frame-pointer -fstrict-aliasing -DNDEBUG -pipe -fPIC -std=gnu++11 -o CMakeFiles/antlr.dir/CommonToken.cpp.o -c /opt/gdl/src/antlr/CommonToken.cpp
#9 65.79 [  7%] Building CXX object src/antlr/CMakeFiles/antlr.dir/InputBuffer.cpp.o
#9 65.82 cd /opt/gdl/build/src/antlr && /usr/bin/c++  -I/opt/gdl/src -I/usr/include/tirpc -I/usr/local/include/eigen3 -I/opt/gdl -I/opt/gdl/src/antlr -O3 -march=broadwell -mfpmath=sse -fomit-frame-pointer -fstrict-aliasing -DNDEBUG -pipe -fPIC -std=gnu++11 -o CMakeFiles/antlr.dir/InputBuffer.cpp.o -c /opt/gdl/src/antlr/InputBuffer.cpp
#9 65.82 [  7%] Building CXX object src/antlr/CMakeFiles/antlr.dir/LLkParser.cpp.o
#9 65.84 cd /opt/gdl/build/src/antlr && /usr/bin/c++  -I/opt/gdl/src -I/usr/include/tirpc -I/usr/local/include/eigen3 -I/opt/gdl -I/opt/gdl/src/antlr -O3 -march=broadwell -mfpmath=sse -fomit-frame-pointer -fstrict-aliasing -DNDEBUG -pipe -fPIC -std=gnu++11 -o CMakeFiles/antlr.dir/LLkParser.cpp.o -c /opt/gdl/src/antlr/LLkParser.cpp
#9 65.86 [  8%] Building CXX object src/antlr/CMakeFiles/antlr.dir/MismatchedCharException.cpp.o
#9 65.87 cd /opt/gdl/build/src/antlr && /usr/bin/c++  -I/opt/gdl/src -I/usr/include/tirpc -I/usr/local/include/eigen3 -I/opt/gdl -I/opt/gdl/src/antlr -O3 -march=broadwell -mfpmath=sse -fomit-frame-pointer -fstrict-aliasing -DNDEBUG -pipe -fPIC -std=gnu++11 -o CMakeFiles/antlr.dir/MismatchedCharException.cpp.o -c /opt/gdl/src/antlr/MismatchedCharException.cpp
#9 65.89 [  8%] Building CXX object src/antlr/CMakeFiles/antlr.dir/MismatchedTokenException.cpp.o
#9 65.89 cd /opt/gdl/build/src/antlr && /usr/bin/c++  -I/opt/gdl/src -I/usr/include/tirpc -I/usr/local/include/eigen3 -I/opt/gdl -I/opt/gdl/src/antlr -O3 -march=broadwell -mfpmath=sse -fomit-frame-pointer -fstrict-aliasing -DNDEBUG -pipe -fPIC -std=gnu++11 -o CMakeFiles/antlr.dir/MismatchedTokenException.cpp.o -c /opt/gdl/src/antlr/MismatchedTokenException.cpp
#9 66.06 [  9%] Building CXX object src/antlr/CMakeFiles/antlr.dir/NoViableAltException.cpp.o
#9 66.06 cd /opt/gdl/build/src/antlr && /usr/bin/c++  -I/opt/gdl/src -I/usr/include/tirpc -I/usr/local/include/eigen3 -I/opt/gdl -I/opt/gdl/src/antlr -O3 -march=broadwell -mfpmath=sse -fomit-frame-pointer -fstrict-aliasing -DNDEBUG -pipe -fPIC -std=gnu++11 -o CMakeFiles/antlr.dir/NoViableAltException.cpp.o -c /opt/gdl/src/antlr/NoViableAltException.cpp
#9 66.09 [  9%] Building CXX object src/antlr/CMakeFiles/antlr.dir/NoViableAltForCharException.cpp.o
#9 66.09 cd /opt/gdl/build/src/antlr && /usr/bin/c++  -I/opt/gdl/src -I/usr/include/tirpc -I/usr/local/include/eigen3 -I/opt/gdl -I/opt/gdl/src/antlr -O3 -march=broadwell -mfpmath=sse -fomit-frame-pointer -fstrict-aliasing -DNDEBUG -pipe -fPIC -std=gnu++11 -o CMakeFiles/antlr.dir/NoViableAltForCharException.cpp.o -c /opt/gdl/src/antlr/NoViableAltForCharException.cpp
#9 66.26 [ 10%] Building CXX object src/antlr/CMakeFiles/antlr.dir/Parser.cpp.o
#9 66.26 cd /opt/gdl/build/src/antlr && /usr/bin/c++  -I/opt/gdl/src -I/usr/include/tirpc -I/usr/local/include/eigen3 -I/opt/gdl -I/opt/gdl/src/antlr -O3 -march=broadwell -mfpmath=sse -fomit-frame-pointer -fstrict-aliasing -DNDEBUG -pipe -fPIC -std=gnu++11 -o CMakeFiles/antlr.dir/Parser.cpp.o -c /opt/gdl/src/antlr/Parser.cpp
#9 66.26 [ 11%] Building CXX object src/antlr/CMakeFiles/antlr.dir/RecognitionException.cpp.o
#9 66.27 cd /opt/gdl/build/src/antlr && /usr/bin/c++  -I/opt/gdl/src -I/usr/include/tirpc -I/usr/local/include/eigen3 -I/opt/gdl -I/opt/gdl/src/antlr -O3 -march=broadwell -mfpmath=sse -fomit-frame-pointer -fstrict-aliasing -DNDEBUG -pipe -fPIC -std=gnu++11 -o CMakeFiles/antlr.dir/RecognitionException.cpp.o -c /opt/gdl/src/antlr/RecognitionException.cpp
#9 66.28 [ 11%] Building CXX object src/antlr/CMakeFiles/antlr.dir/String.cpp.o
#9 66.28 cd /opt/gdl/build/src/antlr && /usr/bin/c++  -I/opt/gdl/src -I/usr/include/tirpc -I/usr/local/include/eigen3 -I/opt/gdl -I/opt/gdl/src/antlr -O3 -march=broadwell -mfpmath=sse -fomit-frame-pointer -fstrict-aliasing -DNDEBUG -pipe -fPIC -std=gnu++11 -o CMakeFiles/antlr.dir/String.cpp.o -c /opt/gdl/src/antlr/String.cpp
#9 66.31 [ 12%] Building CXX object src/antlr/CMakeFiles/antlr.dir/Token.cpp.o
#9 66.32 cd /opt/gdl/build/src/antlr && /usr/bin/c++  -I/opt/gdl/src -I/usr/include/tirpc -I/usr/local/include/eigen3 -I/opt/gdl -I/opt/gdl/src/antlr -O3 -march=broadwell -mfpmath=sse -fomit-frame-pointer -fstrict-aliasing -DNDEBUG -pipe -fPIC -std=gnu++11 -o CMakeFiles/antlr.dir/Token.cpp.o -c /opt/gdl/src/antlr/Token.cpp
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#9 66.44 cd /opt/gdl/build/src/antlr && /usr/bin/c++  -I/opt/gdl/src -I/usr/include/tirpc -I/usr/local/include/eigen3 -I/opt/gdl -I/opt/gdl/src/antlr -O3 -march=broadwell -mfpmath=sse -fomit-frame-pointer -fstrict-aliasing -DNDEBUG -pipe -fPIC -std=gnu++11 -o CMakeFiles/antlr.dir/TokenBuffer.cpp.o -c /opt/gdl/src/antlr/TokenBuffer.cpp
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#9 66.45 cd /opt/gdl/build/src/antlr && /usr/bin/c++  -I/opt/gdl/src -I/usr/include/tirpc -I/usr/local/include/eigen3 -I/opt/gdl -I/opt/gdl/src/antlr -O3 -march=broadwell -mfpmath=sse -fomit-frame-pointer -fstrict-aliasing -DNDEBUG -pipe -fPIC -std=gnu++11 -o CMakeFiles/antlr.dir/TokenStreamBasicFilter.cpp.o -c /opt/gdl/src/antlr/TokenStreamBasicFilter.cpp
#9 66.51 [ 13%] Building CXX object src/antlr/CMakeFiles/antlr.dir/TokenStreamHiddenTokenFilter.cpp.o
#9 66.52 cd /opt/gdl/build/src/antlr && /usr/bin/c++  -I/opt/gdl/src -I/usr/include/tirpc -I/usr/local/include/eigen3 -I/opt/gdl -I/opt/gdl/src/antlr -O3 -march=broadwell -mfpmath=sse -fomit-frame-pointer -fstrict-aliasing -DNDEBUG -pipe -fPIC -std=gnu++11 -o CMakeFiles/antlr.dir/TokenStreamHiddenTokenFilter.cpp.o -c /opt/gdl/src/antlr/TokenStreamHiddenTokenFilter.cpp
#9 66.54 [ 14%] Building CXX object src/antlr/CMakeFiles/antlr.dir/TokenStreamSelector.cpp.o
#9 66.54 cd /opt/gdl/build/src/antlr && /usr/bin/c++  -I/opt/gdl/src -I/usr/include/tirpc -I/usr/local/include/eigen3 -I/opt/gdl -I/opt/gdl/src/antlr -O3 -march=broadwell -mfpmath=sse -fomit-frame-pointer -fstrict-aliasing -DNDEBUG -pipe -fPIC -std=gnu++11 -o CMakeFiles/antlr.dir/TokenStreamSelector.cpp.o -c /opt/gdl/src/antlr/TokenStreamSelector.cpp
#9 66.57 [ 14%] Building CXX object src/antlr/CMakeFiles/antlr.dir/TreeParser.cpp.o
#9 66.58 cd /opt/gdl/build/src/antlr && /usr/bin/c++  -I/opt/gdl/src -I/usr/include/tirpc -I/usr/local/include/eigen3 -I/opt/gdl -I/opt/gdl/src/antlr -O3 -march=broadwell -mfpmath=sse -fomit-frame-pointer -fstrict-aliasing -DNDEBUG -pipe -fPIC -std=gnu++11 -o CMakeFiles/antlr.dir/TreeParser.cpp.o -c /opt/gdl/src/antlr/TreeParser.cpp
#9 67.48 [ 15%] Linking CXX static library libantlr.a
#9 67.48 cd /opt/gdl/build/src/antlr && /usr/bin/cmake -P CMakeFiles/antlr.dir/cmake_clean_target.cmake
#9 67.49 cd /opt/gdl/build/src/antlr && /usr/bin/cmake -E cmake_link_script CMakeFiles/antlr.dir/link.txt --verbose=1
#9 67.50 /usr/bin/ar qc libantlr.a CMakeFiles/antlr.dir/ANTLRUtil.cpp.o CMakeFiles/antlr.dir/ASTFactory.cpp.o CMakeFiles/antlr.dir/ASTNULLType.cpp.o CMakeFiles/antlr.dir/ASTRefCount.cpp.o CMakeFiles/antlr.dir/BaseAST.cpp.o CMakeFiles/antlr.dir/BitSet.cpp.o CMakeFiles/antlr.dir/CharBuffer.cpp.o CMakeFiles/antlr.dir/CharScanner.cpp.o CMakeFiles/antlr.dir/CommonAST.cpp.o CMakeFiles/antlr.dir/CommonASTWithHiddenTokens.cpp.o CMakeFiles/antlr.dir/CommonHiddenStreamToken.cpp.o CMakeFiles/antlr.dir/CommonToken.cpp.o CMakeFiles/antlr.dir/InputBuffer.cpp.o CMakeFiles/antlr.dir/LLkParser.cpp.o CMakeFiles/antlr.dir/MismatchedCharException.cpp.o CMakeFiles/antlr.dir/MismatchedTokenException.cpp.o CMakeFiles/antlr.dir/NoViableAltException.cpp.o CMakeFiles/antlr.dir/NoViableAltForCharException.cpp.o CMakeFiles/antlr.dir/Parser.cpp.o CMakeFiles/antlr.dir/RecognitionException.cpp.o CMakeFiles/antlr.dir/String.cpp.o CMakeFiles/antlr.dir/Token.cpp.o CMakeFiles/antlr.dir/TokenBuffer.cpp.o CMakeFiles/antlr.dir/TokenStreamBasicFilter.cpp.o CMakeFiles/antlr.dir/TokenStreamHiddenTokenFilter.cpp.o CMakeFiles/antlr.dir/TokenStreamSelector.cpp.o CMakeFiles/antlr.dir/TreeParser.cpp.o
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#9 67.53 cd /opt/gdl/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /opt/gdl /opt/gdl/src /opt/gdl/build /opt/gdl/build/src /opt/gdl/build/src/CMakeFiles/gdl.dir/DependInfo.cmake --color=
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#9 67.98 cd /opt/gdl/build/src && /usr/bin/c++ -DHAVE_CONFIG_H -I/opt/gdl/src -I/usr/include/tirpc -I/usr/local/include/eigen3 -I/opt/gdl -I/opt/gdl/src/antlr -I/opt/gdl/build -fopenmp -O3 -march=broadwell -mfpmath=sse -fomit-frame-pointer -fstrict-aliasing -DNDEBUG -pipe -fPIE -std=gnu++11 -o CMakeFiles/gdl.dir/CFMTLexer.cpp.o -c /opt/gdl/src/CFMTLexer.cpp
#9 67.98 cd /opt/gdl/build/src && /usr/bin/c++ -DHAVE_CONFIG_H -I/opt/gdl/src -I/usr/include/tirpc -I/usr/local/include/eigen3 -I/opt/gdl -I/opt/gdl/src/antlr -I/opt/gdl/build -fopenmp -O3 -march=broadwell -mfpmath=sse -fomit-frame-pointer -fstrict-aliasing -DNDEBUG -pipe -fPIE -std=gnu++11 -o CMakeFiles/gdl.dir/FMTIn.cpp.o -c /opt/gdl/src/FMTIn.cpp
#9 67.98 cd /opt/gdl/build/src && /usr/bin/c++ -DHAVE_CONFIG_H -I/opt/gdl/src -I/usr/include/tirpc -I/usr/local/include/eigen3 -I/opt/gdl -I/opt/gdl/src/antlr -I/opt/gdl/build -fopenmp -O3 -march=broadwell -mfpmath=sse -fomit-frame-pointer -fstrict-aliasing -DNDEBUG -pipe -fPIE -std=gnu++11 -o CMakeFiles/gdl.dir/FMTLexer.cpp.o -c /opt/gdl/src/FMTLexer.cpp
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#9 67.98 cd /opt/gdl/build/src && /usr/bin/c++ -DHAVE_CONFIG_H -I/opt/gdl/src -I/usr/include/tirpc -I/usr/local/include/eigen3 -I/opt/gdl -I/opt/gdl/src/antlr -I/opt/gdl/build -fopenmp -O3 -march=broadwell -mfpmath=sse -fomit-frame-pointer -fstrict-aliasing -DNDEBUG -pipe -fPIE -std=gnu++11 -o CMakeFiles/gdl.dir/FMTParser.cpp.o -c /opt/gdl/src/FMTParser.cpp
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#9 67.99 cd /opt/gdl/build/src && /usr/bin/c++ -DHAVE_CONFIG_H -I/opt/gdl/src -I/usr/include/tirpc -I/usr/local/include/eigen3 -I/opt/gdl -I/opt/gdl/src/antlr -I/opt/gdl/build -fopenmp -O3 -march=broadwell -mfpmath=sse -fomit-frame-pointer -fstrict-aliasing -DNDEBUG -pipe -fPIE -std=gnu++11 -o CMakeFiles/gdl.dir/GDLInterpreter.cpp.o -c /opt/gdl/src/GDLInterpreter.cpp
#9 67.99 cd /opt/gdl/build/src && /usr/bin/c++ -DHAVE_CONFIG_H -I/opt/gdl/src -I/usr/include/tirpc -I/usr/local/include/eigen3 -I/opt/gdl -I/opt/gdl/src/antlr -I/opt/gdl/build -fopenmp -O3 -march=broadwell -mfpmath=sse -fomit-frame-pointer -fstrict-aliasing -DNDEBUG -pipe -fPIE -std=gnu++11 -o CMakeFiles/gdl.dir/GDLLexer.cpp.o -c /opt/gdl/src/GDLLexer.cpp
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#9 68.00 cd /opt/gdl/build/src && /usr/bin/c++ -DHAVE_CONFIG_H -I/opt/gdl/src -I/usr/include/tirpc -I/usr/local/include/eigen3 -I/opt/gdl -I/opt/gdl/src/antlr -I/opt/gdl/build -fopenmp -O3 -march=broadwell -mfpmath=sse -fomit-frame-pointer -fstrict-aliasing -DNDEBUG -pipe -fPIE -std=gnu++11 -o CMakeFiles/gdl.dir/GDLParser.cpp.o -c /opt/gdl/src/GDLParser.cpp
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#9 68.02 cd /opt/gdl/build/src && /usr/bin/c++ -DHAVE_CONFIG_H -I/opt/gdl/src -I/usr/include/tirpc -I/usr/local/include/eigen3 -I/opt/gdl -I/opt/gdl/src/antlr -I/opt/gdl/build -fopenmp -O3 -march=broadwell -mfpmath=sse -fomit-frame-pointer -fstrict-aliasing -DNDEBUG -pipe -fPIE -std=gnu++11 -o CMakeFiles/gdl.dir/GDLTreeParser.cpp.o -c /opt/gdl/src/GDLTreeParser.cpp
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#9 68.03 [ 23%] Building CXX object src/CMakeFiles/gdl.dir/basic_op.cpp.o
#9 68.03 cd /opt/gdl/build/src && /usr/bin/c++ -DHAVE_CONFIG_H -I/opt/gdl/src -I/usr/include/tirpc -I/usr/local/include/eigen3 -I/opt/gdl -I/opt/gdl/src/antlr -I/opt/gdl/build -fopenmp -O3 -march=broadwell -mfpmath=sse -fomit-frame-pointer -fstrict-aliasing -DNDEBUG -pipe -fPIE -std=gnu++11 -o CMakeFiles/gdl.dir/datatypes.cpp.o -c /opt/gdl/src/datatypes.cpp
#9 68.05 [ 23%] Building CXX object src/CMakeFiles/gdl.dir/basic_op_new.cpp.o
#9 68.05 cd /opt/gdl/build/src && /usr/bin/c++ -DHAVE_CONFIG_H -I/opt/gdl/src -I/usr/include/tirpc -I/usr/local/include/eigen3 -I/opt/gdl -I/opt/gdl/src/antlr -I/opt/gdl/build -fopenmp -O3 -march=broadwell -mfpmath=sse -fomit-frame-pointer -fstrict-aliasing -DNDEBUG -pipe -fPIE -std=gnu++11 -o CMakeFiles/gdl.dir/convol.cpp.o -c /opt/gdl/src/convol.cpp
#9 68.05 cd /opt/gdl/build/src && /usr/bin/c++ -DHAVE_CONFIG_H -I/opt/gdl/src -I/usr/include/tirpc -I/usr/local/include/eigen3 -I/opt/gdl -I/opt/gdl/src/antlr -I/opt/gdl/build -fopenmp -O3 -march=broadwell -mfpmath=sse -fomit-frame-pointer -fstrict-aliasing -DNDEBUG -pipe -fPIE -std=gnu++11 -o CMakeFiles/gdl.dir/convol2.cpp.o -c /opt/gdl/src/convol2.cpp
#9 68.05 cd /opt/gdl/build/src && /usr/bin/c++ -DHAVE_CONFIG_H -I/opt/gdl/src -I/usr/include/tirpc -I/usr/local/include/eigen3 -I/opt/gdl -I/opt/gdl/src/antlr -I/opt/gdl/build -fopenmp -O3 -march=broadwell -mfpmath=sse -fomit-frame-pointer -fstrict-aliasing -DNDEBUG -pipe -fPIE -std=gnu++11 -o CMakeFiles/gdl.dir/smooth.cpp.o -c /opt/gdl/src/smooth.cpp
#9 68.06 cd /opt/gdl/build/src && /usr/bin/c++ -DHAVE_CONFIG_H -I/opt/gdl/src -I/usr/include/tirpc -I/usr/local/include/eigen3 -I/opt/gdl -I/opt/gdl/src/antlr -I/opt/gdl/build -fopenmp -O3 -march=broadwell -mfpmath=sse -fomit-frame-pointer -fstrict-aliasing -DNDEBUG -pipe -fPIE -std=gnu++11 -o CMakeFiles/gdl.dir/basic_op.cpp.o -c /opt/gdl/src/basic_op.cpp
#9 68.07 cd /opt/gdl/build/src && /usr/bin/c++ -DHAVE_CONFIG_H -I/opt/gdl/src -I/usr/include/tirpc -I/usr/local/include/eigen3 -I/opt/gdl -I/opt/gdl/src/antlr -I/opt/gdl/build -fopenmp -O3 -march=broadwell -mfpmath=sse -fomit-frame-pointer -fstrict-aliasing -DNDEBUG -pipe -fPIE -std=gnu++11 -o CMakeFiles/gdl.dir/basic_op_new.cpp.o -c /opt/gdl/src/basic_op_new.cpp
#9 68.13 [ 24%] Building CXX object src/CMakeFiles/gdl.dir/getas.cpp.o
#9 68.14 cd /opt/gdl/build/src && /usr/bin/c++ -DHAVE_CONFIG_H -I/opt/gdl/src -I/usr/include/tirpc -I/usr/local/include/eigen3 -I/opt/gdl -I/opt/gdl/src/antlr -I/opt/gdl/build -fopenmp -O3 -march=broadwell -mfpmath=sse -fomit-frame-pointer -fstrict-aliasing -DNDEBUG -pipe -fPIE -std=gnu++11 -o CMakeFiles/gdl.dir/getas.cpp.o -c /opt/gdl/src/getas.cpp
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#9 93.78 c++: fatal error: Killed signal terminated program cc1plus
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#9 93.78 make[2]: *** [src/CMakeFiles/gdl.dir/build.make:251: src/CMakeFiles/gdl.dir/basic_op.cpp.o] Error 1
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#9 136.9 make[2]: Leaving directory '/opt/gdl/build'
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------
executor failed running [/bin/sh -c set -eux ;     if [ "$DO_WISARD" -eq "1" ] ; then     BUILD_DATE=`date -Is` &&     BUILD_PKG="git cmake make gcc g++ libncurses5-dev zlib1g-dev libgsl-dev libplplot-dev libreadline-dev libcfitsio-dev libfftw3-dev" &&     apt-get update && apt-get install -y --no-install-recommends $BUILD_PKG unzip libpng16-16 libncurses5 zlib1g libgsl2? libplplot17 libplplot-data libreadline8 libplplotcxx?? libcfitsio9 libfftw3-single3 libfftw3-double3 libtirpc3 &&     cd /opt && wget -q https://gitlab.com/libeigen/eigen/-/archive/3.3.9/eigen-3.3.9.zip && unzip -q eigen-*.zip && rm eigen-*.zip &&     cd /opt/eigen-* && mkdir build && cd build &&     cmake -DCMAKE_BUILD_TYPE=Release .. &&     make install && rm -rf /opt/eigen-* &&     cd /opt/ && git clone --depth 1 https://github.com/wlandsman/IDLAstro.git &&     mkdir -p $ASTROLIB_DIR && cp IDLAstro/pro/* $ASTROLIB_DIR/ && rm -rf IDLAstro* &&     cd /opt/ && git clone --depth 1 https://github.com/${GDL_VERSION} &&     if [ "${OMP_THREAD_LIMIT}" -gt "1" ]; then USE_OPENMP="ON"; else USE_OPENMP="OFF"; fi &&     export CMAKE_ARGS="-DOPENMP=${USE_OPENMP} -DEDITLINE=ON -DREADLINE=ON -DFFTW=ON -DEIGEN3=ON -DEIGEN3DIR=/usr/local/include/eigen3/ -DX11=OFF" &&     export CMAKE_ARGS="$CMAKE_ARGS -DGRAPHICSMAGICK=OFF -DMAGICK=OFF -DWXWIDGETS=OFF -DTIFF=OFF -DNETCDF=OFF -DHDF=OFF -DHDF5=OFF -DPYTHON=OFF" &&     export CMAKE_ARGS="$CMAKE_ARGS -DLIBPROJ=OFF -DSHAPELIB=OFF -DEXPAT=OFF -DUDUNITS2=OFF -DGRIB=OFF -DGLPK=OFF -DINTERACTIVE_GRAPHICS=OFF -DQHULL=OFF" &&     cd /opt/gdl && mkdir build && cd build &&     cmake -DCMAKE_BUILD_TYPE=Release -DCMAKE_C_FLAGS_RELEASE="$GCC_OPTS" -DCMAKE_CXX_FLAGS_RELEASE="$GCC_OPTS" $CMAKE_ARGS .. &&     make -j ${MAKEJ_NTHREADS} $MAKE_OPTS && make install && rm -rf /opt/gdl && rm -rf /usr/local/share/gnudatalanguage/resource/maps &&     rm -rf /usr/local/include/eigen3 &&     echo "install WISARD-CI ( version: ${WISARD_CI_VERSION} )" &&     cd /opt/ && git clone --depth 1 -b ${WISARD_CI_VERSION} https://github.com/JMMC-OpenDev/wisard-ci.git &&     echo "${WISARD_CI_VERSION}-$BUILD_DATE" > /opt/WISARD_CI_VERSION &&     rm -rf $WISARD_DIR/inputdata &&     ln -s /opt/astrolib /usr/local/share/gnudatalanguage/lib &&     apt-get purge --auto-remove -y $BUILD_PKG && rm -rf /var/lib/apt/lists/* ;     fi]: exit code: 2
make: *** [build] Error 1
gmella commented 3 years ago

Zut. Please try next command line before I diff my outputs: docker build -t oiservices:3.5.0a --build-arg OMP_THREAD_LIMIT=2 --rm . or maybe before, use only 8 threads instead of your 16 computed by the Makefile docker build -t oiservices:3.5.0a --build-arg OMP_THREAD_LIMIT=2 --build-arg MAKEJ_NTHREADS=8 --rm .

FerreolS commented 2 years ago

Fixed when MAKEJ_NTHREADS=1