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JTFouquier / ghost-tree

creating hybrid-gene phylogenetic trees for diversity analyses
BSD 3-Clause "New" or "Revised" License
30 stars 20 forks source link

Extract fungi from Silva database is 'genus' specific; Fix this for other ranks #86

Open JTFouquier opened 6 years ago

JTFouquier commented 6 years ago

This is not too big of a deal as currently selecting 'genus' is a liberal option. But if people are interested in collapsing at higher ranks, which are less well classified at lower ranks, then this could cause issues.

Filter.py code in extract_fungi