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Jashcraf / poke

Poke (pronounced poh-keh) is a Polarization Ray Tracing and Gaussian Beamlet module for Python
BSD 3-Clause "New" or "Revised" License
32 stars 6 forks source link

fixed dependency versions hurt my soul #89

Closed brandondube closed 9 months ago

brandondube commented 10 months ago

I created a conda environment for poke:

$ conda create -n poke python=3.11 msgpack-python jupyterlab numpy scipy matplotlib astropy

Then upon pip install, it clobbered a lot of those with pinned versions:

$ pip install -e .
Obtaining file:///Users/bdube/src/poke
  Installing build dependencies ... done
  Checking if build backend supports build_editable ... done
  Getting requirements to build editable ... done
  Preparing editable metadata (pyproject.toml) ... done
Requirement already satisfied: numpy>=1.23.5 in /Users/bdube/miniconda3/envs/poke/lib/python3.11/site-packages (from poke==1.0) (1.25.2)
Requirement already satisfied: matplotlib>=3.6.2 in /Users/bdube/miniconda3/envs/poke/lib/python3.11/site-packages (from poke==1.0) (3.7.1)
Collecting astropy>=5.1.1 (from poke==1.0)
  Obtaining dependency information for astropy>=5.1.1 from https://files.pythonhosted.org/packages/5a/f7/c7030f9d1190bcc49564432a4cb536494aecd7d3fcb654cc5d604c802607/astropy-5.3.2-cp311-cp311-macosx_11_0_arm64.whl.metadata
  Downloading astropy-5.3.2-cp311-cp311-macosx_11_0_arm64.whl.metadata (9.4 kB)
Collecting zosapi==0.2 (from poke==1.0)
  Downloading zosapi-0.2.tar.gz (3.4 kB)
  Preparing metadata (setup.py) ... done
Collecting numexpr>=2.8.4 (from poke==1.0)
  Obtaining dependency information for numexpr>=2.8.4 from https://files.pythonhosted.org/packages/00/7b/e9cbb3a7fd7baa3fadfa1e710fdd6be939d106d25058b43ea49da1ec6229/numexpr-2.8.5-cp311-cp311-macosx_11_0_arm64.whl.metadata
  Downloading numexpr-2.8.5-cp311-cp311-macosx_11_0_arm64.whl.metadata (8.0 kB)
Collecting msgpack>=1.0.5 (from poke==1.0)
  Downloading msgpack-1.0.5-cp311-cp311-macosx_11_0_arm64.whl (69 kB)
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Collecting msgpack-numpy>=0.4.8 (from poke==1.0)
  Downloading msgpack_numpy-0.4.8-py2.py3-none-any.whl (6.9 kB)
Collecting numpydoc==1.5.0 (from poke==1.0)
  Downloading numpydoc-1.5.0-py3-none-any.whl (52 kB)
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Collecting nbsphinx==0.8.11 (from poke==1.0)
  Downloading nbsphinx-0.8.11-py3-none-any.whl (26 kB)
Collecting docutils (from nbsphinx==0.8.11->poke==1.0)
  Obtaining dependency information for docutils from https://files.pythonhosted.org/packages/26/87/f238c0670b94533ac0353a4e2a1a771a0cc73277b88bff23d3ae35a256c1/docutils-0.20.1-py3-none-any.whl.metadata
  Downloading docutils-0.20.1-py3-none-any.whl.metadata (2.8 kB)
Requirement already satisfied: jinja2 in /Users/bdube/miniconda3/envs/poke/lib/python3.11/site-packages (from nbsphinx==0.8.11->poke==1.0) (3.1.2)
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Collecting sphinx>=1.8 (from nbsphinx==0.8.11->poke==1.0)
  Obtaining dependency information for sphinx>=1.8 from https://files.pythonhosted.org/packages/40/c0/e62ce9d243bfa2d9f290d7c730c7df3d9e979f0016e38c767f33ffcc2185/sphinx-7.2.2-py3-none-any.whl.metadata
  Downloading sphinx-7.2.2-py3-none-any.whl.metadata (5.9 kB)
Collecting pythonnet (from zosapi==0.2->poke==1.0)
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Requirement already satisfied: jsonschema>=2.6 in /Users/bdube/miniconda3/envs/poke/lib/python3.11/site-packages (from nbformat->nbsphinx==0.8.11->poke==1.0) (4.17.3)
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Collecting sphinxcontrib-applehelp (from sphinx>=1.8->nbsphinx==0.8.11->poke==1.0)
  Obtaining dependency information for sphinxcontrib-applehelp from https://files.pythonhosted.org/packages/c0/0c/261c0949083c0ac635853528bb0070c89e927841d4e533ba0b5563365c06/sphinxcontrib_applehelp-1.0.7-py3-none-any.whl.metadata
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Collecting sphinxcontrib-devhelp (from sphinx>=1.8->nbsphinx==0.8.11->poke==1.0)
  Obtaining dependency information for sphinxcontrib-devhelp from https://files.pythonhosted.org/packages/c0/03/010ac733ec7b7f71c1dc88e7115743ee466560d6d85373b56fb9916e4586/sphinxcontrib_devhelp-1.0.5-py3-none-any.whl.metadata
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Collecting sphinxcontrib-jsmath (from sphinx>=1.8->nbsphinx==0.8.11->poke==1.0)
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Collecting sphinxcontrib-htmlhelp>=2.0.0 (from sphinx>=1.8->nbsphinx==0.8.11->poke==1.0)
  Obtaining dependency information for sphinxcontrib-htmlhelp>=2.0.0 from https://files.pythonhosted.org/packages/28/7a/958f8e3e6abe8219d0d1f1224886de847ab227b218f4a07b61bc337f64be/sphinxcontrib_htmlhelp-2.0.4-py3-none-any.whl.metadata
  Downloading sphinxcontrib_htmlhelp-2.0.4-py3-none-any.whl.metadata (2.2 kB)
Collecting sphinxcontrib-serializinghtml>=1.1.5 (from sphinx>=1.8->nbsphinx==0.8.11->poke==1.0)
  Obtaining dependency information for sphinxcontrib-serializinghtml>=1.1.5 from https://files.pythonhosted.org/packages/95/d6/2e0bda62b2a808070ac922d21a950aa2cb5e4fcfb87e5ff5f86bc43a2201/sphinxcontrib_serializinghtml-1.1.9-py3-none-any.whl.metadata
  Downloading sphinxcontrib_serializinghtml-1.1.9-py3-none-any.whl.metadata (2.3 kB)
Collecting sphinxcontrib-qthelp (from sphinx>=1.8->nbsphinx==0.8.11->poke==1.0)
  Obtaining dependency information for sphinxcontrib-qthelp from https://files.pythonhosted.org/packages/1f/e5/1850f3f118e95581c1e30b57028ac979badee1eb29e70ee72b0241f5a185/sphinxcontrib_qthelp-1.0.6-py3-none-any.whl.metadata
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Collecting snowballstemmer>=2.0 (from sphinx>=1.8->nbsphinx==0.8.11->poke==1.0)
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Collecting alabaster<0.8,>=0.7 (from sphinx>=1.8->nbsphinx==0.8.11->poke==1.0)
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Collecting imagesize>=1.3 (from sphinx>=1.8->nbsphinx==0.8.11->poke==1.0)
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Collecting clr-loader<0.3.0,>=0.2.2 (from pythonnet->zosapi==0.2->poke==1.0)
  Obtaining dependency information for clr-loader<0.3.0,>=0.2.2 from https://files.pythonhosted.org/packages/b3/1a/2801c4e3888aac8fcd4d88d32a1155a778d1c01ca040ae8137d433a39cc6/clr_loader-0.2.6-py3-none-any.whl.metadata
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Building wheels for collected packages: poke, zosapi
  Building editable for poke (pyproject.toml) ... done
  Created wheel for poke: filename=poke-1.0-0.editable-py3-none-any.whl size=3694 sha256=ca651d35d5a422a5418931019f48e46755a2ce4fa2eb3e9f26dae22097915a69
  Stored in directory: /private/var/folders/hw/82bzy1hn5zxdlfrksnvdmqf40000gq/T/pip-ephem-wheel-cache-f5wxa_ee/wheels/68/a6/2e/f1c1633df3038aa39d97de13ceb98190ef152a9c92747e56cb
  Building wheel for zosapi (setup.py) ... done
  Created wheel for zosapi: filename=zosapi-0.2-py3-none-any.whl size=3632 sha256=050ed499f6b325737f0f69d65546bce99f807138ee38b8ef1625e4622a7a438b
  Stored in directory: /Users/bdube/Library/Caches/pip/wheels/08/d2/50/ab3479d2ab1a3aad59b06ce65908c375c13f0205e46df2ff98
Successfully built poke zosapi
Installing collected packages: snowballstemmer, msgpack, sphinxcontrib-jsmath, numexpr, msgpack-numpy, imagesize, docutils, alabaster, clr-loader, astropy, pythonnet, zosapi, sphinxcontrib-serializinghtml, sphinxcontrib-qthelp, sphinxcontrib-htmlhelp, sphinxcontrib-devhelp, sphinxcontrib-applehelp, sphinx, numpydoc, nbsphinx, poke
  Attempting uninstall: msgpack
    Found existing installation: msgpack 1.0.3
    Uninstalling msgpack-1.0.3:
      Successfully uninstalled msgpack-1.0.3
  Attempting uninstall: astropy
    Found existing installation: astropy 5.1
    Uninstalling astropy-5.1:
      Successfully uninstalled astropy-5.1
Successfully installed alabaster-0.7.13 astropy-5.3.2 clr-loader-0.2.6 docutils-0.20.1 imagesize-1.4.1 msgpack-1.0.5 msgpack-numpy-0.4.8 nbsphinx-0.8.11 numexpr-2.8.5 numpydoc-1.5.0 poke-1.0 pythonnet-3.0.1 snowballstemmer-2.2.0 sphinx-7.2.2 sphinxcontrib-applehelp-1.0.7 sphinxcontrib-devhelp-1.0.5 sphinxcontrib-htmlhelp-2.0.4 sphinxcontrib-jsmath-1.0.1 sphinxcontrib-qthelp-1.0.6 sphinxcontrib-serializinghtml-1.1.9 zosapi-0.2

It would be lovely if poke specified at worst lower bounds on versions, so that installing poke doesn't potentially change/break existing environments

Jashcraf commented 10 months ago

Roger that and can do! Would upper and lower bounds be better?

brandondube commented 10 months ago

upper bounds accelerate the heat death of the universe*, lower only please

* mean that eventually your code can't be used with anything else unless you religiously update the dependency versions, which you probably won't experience any breaking changes from anyway (in ~10y, not pinning numpy and scipy versions has never hurt me)

Jashcraf commented 9 months ago

Mostly fixed a while ago, finished up everything in 884a2dd049468bf2d84a37381f17bb07d681ac55