JeffWeinell / misc.wrappers

Collection of wrappers, pipelines, and some original tools for analysis of population and phylogenetic datasets.
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R dependencies no longer available #1

Open kellynpetersen opened 1 month ago

kellynpetersen commented 1 month ago

Hi Jeff!

I would like to use your misc.wrappers package to (1) convert a vcf to a structure-format file, and also to (2) run DAPC and SNMF on a vcf file.

Several R dependencies have been deprecated and are no longer available, even though I haven't updated R in a while (I am using R version 4.3.1 from 2023-06-16). Do you have any suggestions to be able to download and use your package given these changes? Or can you tell me what version of R you last used with this package?

Thanks! Kelly

JeffWeinell commented 1 month ago

Hi Kelly

It has been a while since I have updated or checked on the functionality of this package, but I will see what I can do to get it working again.

I will get back to you within the next couple of days, hopefully with a solution!

-Jeff


Jeffrey Weinell, Ph.D.
NSF Postdoctoral Fellow
American Museum of Natural History

On Mon, Sep 30, 2024 at 4:19 PM kellynpetersen ***@***.***>
wrote:

> Hi Jeff!
>
> I would like to use your misc.wrappers package to (1) convert a vcf to a
> structure-format file, and also to (2) run DAPC and SNMF on a vcf file.
>
> Several R dependencies have been deprecated and are no longer available,
> even though I haven't updated R in a while (I am using R version 4.3.1 from
> 2023-06-16). Do you have any suggestions to be able to download and use
> your package given these changes? Or can you tell me what version of R you
> last used with this package?
>
> Thanks!
> Kelly
>
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