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Jeltje / defuse

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Reference File defuse.cdna.fa Empty #1

Open iMammal opened 3 years ago

iMammal commented 3 years ago

The reference creation process breaks: docker run -v /mnt/morris/defuse/:/data jeltje/defuse reference -c hg38config.txt ... Input files DNA, FASTA: /data/defuseData/defuse.cdna.fa Reading reference sizes Warning: Empty input file Error: No unambiguous stretches of characters in the input. Aborting...

Looks like that file is in fact empty:

morris@galaxy-test1:~/confFuse$ ls -al /mnt/morris/defuse/defuseData/defuse.cdna.fa -rw-r--r-- 1 morris morris 0 Sep 12 14:06 /mnt/morris/defuse/defuseData/defuse.cdna.fa

iMammal commented 3 years ago

hg19config.txt seems to work.