Note:
MHC class I epitope are 8-11,
MHC class II epitopes are 9-25 aa. a hallmark of MHC class II binding peptide groove is there are 4 major pockets form a 9-mer core region and this core region interaction largely determines s binding affinity and specificity.
MHC class II epitope (cluster sequence) prediction
RSVB-F
MHC class II G epitope prediction
For MHC class II epitope prediction, no epitope are founded in the G gene duplication region
RSVA-G
RSVB-G
6 not deletion was at AA 162, no epitope was found after that region
Note: MHC class I epitope are 8-11, MHC class II epitopes are 9-25 aa. a hallmark of MHC class II binding peptide groove is there are 4 major pockets form a 9-mer core region and this core region interaction largely determines s binding affinity and specificity.
MHC class II epitope (cluster sequence) prediction
RSVB-F
MHC class II G epitope prediction
For MHC class II epitope prediction, no epitope are founded in the G gene duplication region
RSVA-G
RSVB-G
6 not deletion was at AA 162, no epitope was found after that region