jphe
commented
1 year ago Run "scTE_build -g hg38" will generate the hg38.exclusive.idx file.
This script will automatically download the genome annotations for human from:
ftp://ftp.ebi.ac.uk/pub/databases/gencode/Gencode_human/release_30/gencode.v30.annotation.gtf.gz http://hgdownload.soe.ucsc.edu/goldenPath/hg38/database/rmsk.txt.gz
Hi,
Thank you for the resource! I am having trouble getting started using it. Mainly, I can't seem to understand how hg38.exclusive.idx was generated. I would greatly appreciate the help.