Some questions about pbmc 5' dataset in the paper

JinmiaoChenLab / Batch-effect-removal-benchmarking

A benchmark of batch-effect correction methods for single-cell RNA sequencing data

70 stars 44 forks source link

Some questions about pbmc 5' dataset in the paper #10

Open HelloWorldLTY opened 3 years ago

HelloWorldLTY commented 3 years ago

Hello, I think in original benchmark paper, I cannot find the original paper for human pbmc 5' dataset (I know 3' part coming from Zheng et al.). Where can I find the source for 5' dataset? Thanks.

HelloWorldLTY commented 3 years ago

In addition, now I have another question.

For asw rate, it seems that when you caluculate the asw distance, you do not filter out the batch specific cells. Could you please explain more about this point? Thanks.