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JinmiaoChenLab / SpatialGlue

SpatialGlue is a novel deep learning methods for spatial multi-omics data integration.
GNU Affero General Public License v3.0
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Can SpatialGlue support integrate multiple replicates of RNA+ATAC multiomics slices? #7

Open EddieLv opened 1 week ago

EddieLv commented 1 week ago

I have 3 replicates of spatial RNA+ATAC multiomics data, can SpatialGlue integrate them together? Or I must cluster each slice individually?

longyahui commented 1 week ago

Hi,

Thank you for your attenion on wor work.

The current version of our SpatialGlue only supports single slice input. You can combine these 3 replicates of spatial RNA+ATAC before input of the model, and then analyze the combined sample using SpatialGlue.

Hope it helps. Thanks again.

Best regards, Yahui