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JoseBlanca / franklin

franklin library for NGS sequencing analysis.
http://bioinf.comav.upv.es/franklin/
GNU Affero General Public License v3.0
25 stars 3 forks source link

improve EST mapping to genome #48

Open JoseBlanca opened 13 years ago

JoseBlanca commented 13 years ago

gmap is doing a poor job, improve it. Take a look at tophat and search for others. If none is found a smith-waterman realignment of the gmap result could be an alternative.

JoseBlanca commented 13 years ago

Maybe blat?

JoseBlanca commented 13 years ago

or exonerate server