[PRE REVIEW]: Julia for HPC: In Situ data Analysis with Julia for Climate Simulations at Large Scale

[whedon]

Submitting author: @ltang85 (Li Tang) Repository: https://github.com/ltang85/In-Situ-data-Analysis-with-Julia-for-Climate-Simulations-at-Large-Scale Version: Editor: @luraess Reviewers: @simonbyrne, @williamfgc Managing EiC: Valentin Churavy

Author instructions

Thanks for submitting your paper to JCON @ltang85. Currently, there isn't an JCON editor assigned to your paper.

The author's suggestion for the handling editor is @vchuravy.

@ltang85 if you have any suggestions for potential reviewers then please mention them here in this thread (without tagging them with an @). In addition, this list of people have already agreed to review for JCON and may be suitable for this submission (please start at the bottom of the list).

Editor instructions

The JCON submission bot @whedon is here to help you find and assign reviewers and start the main review. To find out what @whedon can do for you type:

@whedon commands

[whedon]

Hello human, I'm @whedon, a robot that can help you with some common editorial tasks.

:warning: JOSS reduced service mode :warning:

Due to the challenges of the COVID-19 pandemic, JOSS is currently operating in a "reduced service mode". You can read more about what that means in our blog post.

For a list of things I can do to help you, just type:

@whedon commands

For example, to regenerate the paper pdf after making changes in the paper's md or bib files, type:

@whedon generate pdf

[whedon]

PDF failed to compile for issue #118 with the following error:

 Can't find any papers to compile :-(

[carstenbauer]

@whedon assign @carstenbauer as editor

[whedon]

OK, the editor is @carstenbauer

[carstenbauer]

@ltang85 Unfortunately, I can't see a repository under https://github.com/ltang85/In-Situ-data-Analysis-with-Julia-for-Climate-Simulations-at-Large-Scale. I get a 404. Perhaps the repository is private? If so, please make it public.

[carstenbauer]

@ltang85 Can you also please suggest a few potential reviewers?

[carstenbauer]

If you need inspiration, you can take a look at the list below.

[carstenbauer]

@whedon list reviewers

[whedon]

Here's the current list of reviewers: http://bit.ly/2V9GSFq

[ltang85]

@carstenbauer I am sorry I might have to make it private due to our lab's policy. I have added you in the repo, so you should be able to see it. I will add other reviewers to the repo when assigned. Let me know if it is still not accessible for you.

I will let you know a few potential reviewers today or tomorrow.

Thanks.

[ltang85]

@carstenbauer Sorry for the late reply. I would suggest bkamins, dmbates, cmichelenstrofer, vishwas1984 who are listed in the spreadsheet. Let me know if you need more suggestions.

[carstenbauer]

I am sorry I might have to make it private due to our lab's policy

Hi @ltang85, unfortunately we can only accept and process submissions that are publicly accessible (our entire review process is public). However, I don't quite understand why you can't make the given repository public: It seems to only contain the paper which, ideally, will be made public at the time of publication anyways. In any case, please let me know if you can make the repository public such that we can continue.

[ltang85]

Hi @carstenbauer, I just made it public, so we can continue. This submission is able to be public under LA-UR-22-31718. Please let me know if you need any other info. Thanks.

[carstenbauer]

@ltang85, can you please suggest a few potential reviewers?

[carstenbauer]

@whedon generate pdf

[whedon]

PDF failed to compile for issue #118 with the following error:

 Latexmk: This is Latexmk, John Collins, 17 Jan. 2018, version: 4.55.
Rule 'pdflatex': Rules & subrules not known to be previously run:
   pdflatex
Rule 'pdflatex': The following rules & subrules became out-of-date:
      'pdflatex'
------------
Run number 1 of rule 'pdflatex'
------------
------------
Running 'pdflatex  -recorder  "paper.tex"'
------------
===========Latexmk: Missing input file: 'algorithm2e.sty' from line
  '! LaTeX Error: File `algorithm2e.sty' not found.'
Latexmk: Missing input file: 'algorithm2e.sty' from line
  '! LaTeX Error: File `algorithm2e.sty' not found.'
Failure to make 'paper.pdf'
Collected error summary (may duplicate other messages):
  pdflatex: Command for 'pdflatex' gave return code 1
      Refer to 'paper.log' for details
Looks like we failed to compile the PDF

[carstenbauer]

@ltang85 there seems to be an issue with algorithm2e. Please try to fix this. You can retrigger compilation any time with the command @whedon generate pdf (see above).

[carstenbauer]

Hey @ltang85, are you still willing to move forward with this? If so, please try to fix the paper compilation.

[ltang85]

@whedon generate pdf

[whedon]

PDF failed to compile for issue #118 with the following error:

 Latexmk: This is Latexmk, John Collins, 17 Jan. 2018, version: 4.55.
Rule 'pdflatex': Rules & subrules not known to be previously run:
   pdflatex
Rule 'pdflatex': The following rules & subrules became out-of-date:
      'pdflatex'
------------
Run number 1 of rule 'pdflatex'
------------
------------
Running 'pdflatex  -recorder  "paper.tex"'
------------
===========Latexmk: Missing input file: 'algorithm2e.sty' from line
  '! LaTeX Error: File `algorithm2e.sty' not found.'
Latexmk: Missing input file: 'algorithm2e.sty' from line
  '! LaTeX Error: File `algorithm2e.sty' not found.'
Failure to make 'paper.pdf'
Collected error summary (may duplicate other messages):
  pdflatex: Command for 'pdflatex' gave return code 1
      Refer to 'paper.log' for details
Looks like we failed to compile the PDF

[ltang85]

@whedon generate pdf

[whedon]

PDF failed to compile for issue #118 with the following error:

 Latexmk: This is Latexmk, John Collins, 17 Jan. 2018, version: 4.55.
Rule 'pdflatex': Rules & subrules not known to be previously run:
   pdflatex
Rule 'pdflatex': The following rules & subrules became out-of-date:
      'pdflatex'
------------
Run number 1 of rule 'pdflatex'
------------
------------
Running 'pdflatex  -recorder  "paper.tex"'
------------
===========Latexmk: Missing input file: 'ifoddpage.sty' from line
  '! LaTeX Error: File `ifoddpage.sty' not found.'
Latexmk: Missing input file: 'ifoddpage.sty' from line
  '! LaTeX Error: File `ifoddpage.sty' not found.'
Failure to make 'paper.pdf'
Collected error summary (may duplicate other messages):
  pdflatex: Command for 'pdflatex' gave return code 1
      Refer to 'paper.log' for details
Looks like we failed to compile the PDF

[ltang85]

@whedon generate pdf

[whedon]

PDF failed to compile for issue #118 with the following error:

 Latexmk: This is Latexmk, John Collins, 17 Jan. 2018, version: 4.55.
Rule 'pdflatex': Rules & subrules not known to be previously run:
   pdflatex
Rule 'pdflatex': The following rules & subrules became out-of-date:
      'pdflatex'
------------
Run number 1 of rule 'pdflatex'
------------
------------
Running 'pdflatex  -recorder  "paper.tex"'
------------
===========Latexmk: Missing input file: 'relsize.sty' from line
  '! LaTeX Error: File `relsize.sty' not found.'
Latexmk: Missing input file: 'relsize.sty' from line
  '! LaTeX Error: File `relsize.sty' not found.'
Failure to make 'paper.pdf'
Collected error summary (may duplicate other messages):
  pdflatex: Command for 'pdflatex' gave return code 1
      Refer to 'paper.log' for details
Looks like we failed to compile the PDF

[ltang85]

@whedon generate pdf

[whedon]

PDF failed to compile for issue #118 with the following error:

 Latexmk: This is Latexmk, John Collins, 17 Jan. 2018, version: 4.55.
Rule 'pdflatex': Rules & subrules not known to be previously run:
   pdflatex
Rule 'pdflatex': The following rules & subrules became out-of-date:
      'pdflatex'
------------
Run number 1 of rule 'pdflatex'
------------
------------
Running 'pdflatex  -recorder  "paper.tex"'
------------
Rule 'pdflatex': File changes, etc:
   Changed files, or newly in use since previous run(s):
      'paper.aux'
------------
Run number 2 of rule 'pdflatex'
------------
------------
Running 'pdflatex  -recorder  "paper.tex"'
------------
Rule 'pdflatex': File changes, etc:
   Changed files, or newly in use since previous run(s):
      'paper.out'
------------
Run number 3 of rule 'pdflatex'
------------
------------
Running 'pdflatex  -recorder  "paper.tex"'
------------
Failure to make 'paper.pdf'
Collected error summary (may duplicate other messages):
  pdflatex: Command for 'pdflatex' gave return code 1
      Refer to 'paper.log' for details
Looks like we failed to compile the PDF

[ltang85]

@whedon generate pdf

[whedon]

PDF failed to compile for issue #118 with the following error:

 Latexmk: This is Latexmk, John Collins, 17 Jan. 2018, version: 4.55.
Rule 'pdflatex': Rules & subrules not known to be previously run:
   pdflatex
Rule 'pdflatex': The following rules & subrules became out-of-date:
      'pdflatex'
------------
Run number 1 of rule 'pdflatex'
------------
------------
Running 'pdflatex  -recorder  "paper.tex"'
------------
Rule 'pdflatex': File changes, etc:
   Changed files, or newly in use since previous run(s):
      'paper.aux'
------------
Run number 2 of rule 'pdflatex'
------------
------------
Running 'pdflatex  -recorder  "paper.tex"'
------------
Rule 'pdflatex': File changes, etc:
   Changed files, or newly in use since previous run(s):
      'paper.out'
------------
Run number 3 of rule 'pdflatex'
------------
------------
Running 'pdflatex  -recorder  "paper.tex"'
------------
Failure to make 'paper.pdf'
Collected error summary (may duplicate other messages):
  pdflatex: Command for 'pdflatex' gave return code 1
      Refer to 'paper.log' for details
Looks like we failed to compile the PDF

[ltang85]

@carstenbauer I solved several issues and can generate the pdf locally with "latexmk -bibtex -pdf paper.tex". However, I am still getting errors with whedon. Do you know how to access paper.log with whedon? Or can we just submit the generated pdf? Thansk.

[carstenbauer]

If we don't get it to work, we can continue with the generated pdf for now. But eventually it needs to work. I'll try to take a closer look soon.

[ltang85]

@carstenbauer sounds great. Please continue with https://github.com/ltang85/In-Situ-data-Analysis-with-Julia-for-Climate-Simulations-at-Large-Scale/blob/main/paper/paper.pdf

I am also working on the latex issues.

Thanks.

[carstenbauer]

Hey @ltang85: I have to correct myself, we can only move forward with this submission if the compilation is working. Also, I must inform you that I'm in the process of stepping down as an editor for the JuliaCon proceedings and thus won't have any bandwidth to debug the whedon issues.

Please let me know if you are willing to debug the compilation problem in which case I might assign a new editor. Otherwise, I will close this issue.

(Sorry for the inconvenience)

[ltang85]

@carstenbauer No problem, let me try to fix the issues and I will let you and the new editor know the status next week. Thanks.

[matbesancon]

@whedon assign @luraess as editor

[luraess]

Hi @ltang85. I am reaching out as we had a transition period at JuliaCon Proceedings and I am the new editor handling your submission. According to the thread, you encountered some issues wrt generating the PDF for your manuscript. Before we continue, maybe we should sync on 2 important aspects:

1. Are you still interested in getting your work published here
2. Could you resolve the PDF generation issue in the meantime

[ltang85]

Hi @luraess, we are still interested in getting this work published here and will try to resolve the PDF generation issue in the meatime. Thanks.

[luraess]

Thanks for your reply @ltang85. Please try to solve the generation issue within the coming week ideally, such that we could proceed with the revision.

[luraess]

Hi @ltang85, I was wondering if you could make any progress on the PDF generation issue? Ideally, we have this resolved within the coming week else we cannot proceed with the review process. Please try to get the PDF generation to work by September 22. Thanks

[ltang85]

@whedon generate pdf

[whedon]

PDF failed to compile for issue #118 with the following error:

 Latexmk: This is Latexmk, John Collins, 17 Jan. 2018, version: 4.55.
Rule 'pdflatex': Rules & subrules not known to be previously run:
   pdflatex
Rule 'pdflatex': The following rules & subrules became out-of-date:
      'pdflatex'
------------
Run number 1 of rule 'pdflatex'
------------
------------
Running 'pdflatex  -recorder  "paper.tex"'
------------
===========Latexmk: Missing input file: 'algorithm2e.sty' from line
  '! LaTeX Error: File `algorithm2e.sty' not found.'
Latexmk: Missing input file: 'algorithm2e.sty' from line
  '! LaTeX Error: File `algorithm2e.sty' not found.'
Failure to make 'paper.pdf'
Collected error summary (may duplicate other messages):
  pdflatex: Command for 'pdflatex' gave return code 1
      Refer to 'paper.log' for details
Looks like we failed to compile the PDF

[ltang85]

@whedon generate pdf

[whedon]

PDF failed to compile for issue #118 with the following error:

 Latexmk: This is Latexmk, John Collins, 17 Jan. 2018, version: 4.55.
Rule 'pdflatex': Rules & subrules not known to be previously run:
   pdflatex
Rule 'pdflatex': The following rules & subrules became out-of-date:
      'pdflatex'
------------
Run number 1 of rule 'pdflatex'
------------
------------
Running 'pdflatex  -recorder  "paper.tex"'
------------
Latexmk: List of undefined refs and citations:
  Citation `7192723' on page 3 undefined on input line 86
  Citation `adios' on page 2 undefined on input line 83
  Citation `ascent' on page 2 undefined on input line 83
  Citation `aycock2003brief' on page 2 undefined on input line 65
  Citation `bezanson2012julia' on page 2 undefined on input line 65
  Citation `bezanson2017julia' on page 2 undefined on input line 65
  Citation `broderick2013streaming' on page 2 undefined on input line 41
  Citation `catalyst' on page 2 undefined on input line 83
  Citation `chen2016smartsim' on page 2 undefined on input line 83
  Citation `gabriel2004open' on page 4 undefined on input line 171
  Citation `gev_huang2016estimating' on page 3 undefined on input line 86
  Citation `gev_wang2017detection' on page 3 undefined on input line 86
  Citation `golaz2019doe' on page 1 undefined on input line 37
  Citation `golaz2019doe' on page 2 undefined on input line 59
  Citation `gropp1996user' on page 4 undefined on input line 171
  Citation `insitu_star' on page 2 undefined on input line 83
  Citation `insitu_terminology' on page 2 undefined on input line 83
  Citation `kelly2020chimbuko' on page 2 undefined on input line 83
  Citation `lattner2004llvm' on page 2 undefined on input line 65
  Citation `panda2013mvapich' on page 4 undefined on input line 171
  Citation `qian2018parametric' on page 2 undefined on input line 59
  Citation `rasch2019overview' on page 2 undefined on input line 59
  Citation `sensei_url' on page 2 undefined on input line 83
  Citation `ssw' on page 4 undefined on input line 197
  Citation `ssw_def' on page 4 undefined on input line 197
  Citation `ssw_isav' on page 3 undefined on input line 86
  Citation `ssw_survey' on page 3 undefined on input line 86
  Citation `thompson2018decline' on page 1 undefined on input line 34
  Citation `visit' on page 2 undefined on input line 83
  Citation `walker1996mpi' on page 1 undefined on input line 37
  Citation `wang2021tributarypca' on page 2 undefined on input line 41
  Citation `wang2021tributarypca' on page 3 undefined on input line 88
  Citation `xie2018understanding' on page 2 undefined on input line 59
  Citation `zhang2019evaluation' on page 2 undefined on input line 59
  Reference `fig:infra' on page 3 undefined on input line 98
  Reference `ssw_algo' on page 4 undefined on input line 199
Latexmk: Summary of warnings:
  Latex failed to resolve 2 reference(s)
  Latex failed to resolve 37 citation(s)
Rule 'pdflatex': File changes, etc:
   Changed files, or newly in use since previous run(s):
      'paper.aux'
------------
Run number 2 of rule 'pdflatex'
------------
------------
Running 'pdflatex  -recorder  "paper.tex"'
------------
Latexmk: List of undefined refs and citations:
  Citation `7192723' on page 3 undefined on input line 86
  Citation `adios' on page 2 undefined on input line 83
  Citation `ascent' on page 2 undefined on input line 83
  Citation `aycock2003brief' on page 2 undefined on input line 65
  Citation `bezanson2012julia' on page 2 undefined on input line 65
  Citation `bezanson2017julia' on page 2 undefined on input line 65
  Citation `broderick2013streaming' on page 2 undefined on input line 41
  Citation `catalyst' on page 2 undefined on input line 83
  Citation `chen2016smartsim' on page 2 undefined on input line 83
  Citation `gabriel2004open' on page 4 undefined on input line 171
  Citation `gev_huang2016estimating' on page 3 undefined on input line 86
  Citation `gev_wang2017detection' on page 3 undefined on input line 86
  Citation `golaz2019doe' on page 1 undefined on input line 37
  Citation `golaz2019doe' on page 2 undefined on input line 59
  Citation `gropp1996user' on page 4 undefined on input line 171
  Citation `insitu_star' on page 2 undefined on input line 83
  Citation `insitu_terminology' on page 2 undefined on input line 83
  Citation `kelly2020chimbuko' on page 2 undefined on input line 83
  Citation `lattner2004llvm' on page 2 undefined on input line 65
  Citation `panda2013mvapich' on page 4 undefined on input line 171
  Citation `qian2018parametric' on page 2 undefined on input line 59
  Citation `rasch2019overview' on page 2 undefined on input line 59
  Citation `sensei_url' on page 2 undefined on input line 83
  Citation `ssw' on page 4 undefined on input line 197
  Citation `ssw_def' on page 4 undefined on input line 197
  Citation `ssw_isav' on page 3 undefined on input line 86
  Citation `ssw_survey' on page 3 undefined on input line 86
  Citation `thompson2018decline' on page 1 undefined on input line 34
  Citation `visit' on page 2 undefined on input line 83
  Citation `walker1996mpi' on page 1 undefined on input line 37
  Citation `wang2021tributarypca' on page 2 undefined on input line 41
  Citation `wang2021tributarypca' on page 3 undefined on input line 88
  Citation `xie2018understanding' on page 2 undefined on input line 59
  Citation `zhang2019evaluation' on page 2 undefined on input line 59
  Reference `ssw_algo' on page 4 undefined on input line 199
Latexmk: Summary of warnings:
  Latex failed to resolve 1 reference(s)
  Latex failed to resolve 37 citation(s)
Rule 'pdflatex': File changes, etc:
   Changed files, or newly in use since previous run(s):
      'paper.out'
------------
Run number 3 of rule 'pdflatex'
------------
------------
Running 'pdflatex  -recorder  "paper.tex"'
------------
Latexmk: List of undefined refs and citations:
  Citation `7192723' on page 3 undefined on input line 86
  Citation `adios' on page 2 undefined on input line 83
  Citation `ascent' on page 2 undefined on input line 83
  Citation `aycock2003brief' on page 2 undefined on input line 65
  Citation `bezanson2012julia' on page 2 undefined on input line 65
  Citation `bezanson2017julia' on page 2 undefined on input line 65
  Citation `broderick2013streaming' on page 2 undefined on input line 41
  Citation `catalyst' on page 2 undefined on input line 83
  Citation `chen2016smartsim' on page 2 undefined on input line 83
  Citation `gabriel2004open' on page 4 undefined on input line 171
  Citation `gev_huang2016estimating' on page 3 undefined on input line 86
  Citation `gev_wang2017detection' on page 3 undefined on input line 86
  Citation `golaz2019doe' on page 1 undefined on input line 37
  Citation `golaz2019doe' on page 2 undefined on input line 59
  Citation `gropp1996user' on page 4 undefined on input line 171
  Citation `insitu_star' on page 2 undefined on input line 83
  Citation `insitu_terminology' on page 2 undefined on input line 83
  Citation `kelly2020chimbuko' on page 2 undefined on input line 83
  Citation `lattner2004llvm' on page 2 undefined on input line 65
  Citation `panda2013mvapich' on page 4 undefined on input line 171
  Citation `qian2018parametric' on page 2 undefined on input line 59
  Citation `rasch2019overview' on page 2 undefined on input line 59
  Citation `sensei_url' on page 2 undefined on input line 83
  Citation `ssw' on page 4 undefined on input line 197
  Citation `ssw_def' on page 4 undefined on input line 197
  Citation `ssw_isav' on page 3 undefined on input line 86
  Citation `ssw_survey' on page 3 undefined on input line 86
  Citation `thompson2018decline' on page 1 undefined on input line 34
  Citation `visit' on page 2 undefined on input line 83
  Citation `walker1996mpi' on page 1 undefined on input line 37
  Citation `wang2021tributarypca' on page 2 undefined on input line 41
  Citation `wang2021tributarypca' on page 3 undefined on input line 88
  Citation `xie2018understanding' on page 2 undefined on input line 59
  Citation `zhang2019evaluation' on page 2 undefined on input line 59
  Reference `ssw_algo' on page 4 undefined on input line 199
Latexmk: Summary of warnings:
  Latex failed to resolve 1 reference(s)
  Latex failed to resolve 37 citation(s)
Failure to make 'paper.pdf'
Collected error summary (may duplicate other messages):
  pdflatex: Command for 'pdflatex' gave return code 1
      Refer to 'paper.log' for details
Looks like we failed to compile the PDF

[ltang85]

@whedon generate pdf

[whedon]

PDF failed to compile for issue #118 with the following error:

 Latexmk: This is Latexmk, John Collins, 17 Jan. 2018, version: 4.55.
Rule 'pdflatex': Rules & subrules not known to be previously run:
   pdflatex
Rule 'pdflatex': The following rules & subrules became out-of-date:
      'pdflatex'
------------
Run number 1 of rule 'pdflatex'
------------
------------
Running 'pdflatex  -recorder  "paper.tex"'
------------
Latexmk: List of undefined refs and citations:
  Citation `7192723' on page 3 undefined on input line 86
  Citation `adios' on page 2 undefined on input line 83
  Citation `ascent' on page 2 undefined on input line 83
  Citation `aycock2003brief' on page 2 undefined on input line 65
  Citation `bezanson2012julia' on page 2 undefined on input line 65
  Citation `bezanson2017julia' on page 2 undefined on input line 65
  Citation `broderick2013streaming' on page 2 undefined on input line 41
  Citation `catalyst' on page 2 undefined on input line 83
  Citation `chen2016smartsim' on page 2 undefined on input line 83
  Citation `gabriel2004open' on page 4 undefined on input line 171
  Citation `gev_huang2016estimating' on page 3 undefined on input line 86
  Citation `gev_wang2017detection' on page 3 undefined on input line 86
  Citation `golaz2019doe' on page 1 undefined on input line 37
  Citation `golaz2019doe' on page 2 undefined on input line 59
  Citation `gropp1996user' on page 4 undefined on input line 171
  Citation `insitu_star' on page 2 undefined on input line 83
  Citation `insitu_terminology' on page 2 undefined on input line 83
  Citation `kelly2020chimbuko' on page 2 undefined on input line 83
  Citation `lattner2004llvm' on page 2 undefined on input line 65
  Citation `panda2013mvapich' on page 4 undefined on input line 171
  Citation `qian2018parametric' on page 2 undefined on input line 59
  Citation `rasch2019overview' on page 2 undefined on input line 59
  Citation `sensei_url' on page 2 undefined on input line 83
  Citation `ssw' on page 4 undefined on input line 197
  Citation `ssw_def' on page 4 undefined on input line 197
  Citation `ssw_isav' on page 3 undefined on input line 86
  Citation `ssw_survey' on page 3 undefined on input line 86
  Citation `thompson2018decline' on page 1 undefined on input line 34
  Citation `visit' on page 2 undefined on input line 83
  Citation `walker1996mpi' on page 1 undefined on input line 37
  Citation `wang2021tributarypca' on page 2 undefined on input line 41
  Citation `wang2021tributarypca' on page 3 undefined on input line 88
  Citation `xie2018understanding' on page 2 undefined on input line 59
  Citation `zhang2019evaluation' on page 2 undefined on input line 59
  Reference `fig:infra' on page 3 undefined on input line 98
  Reference `ssw_algo' on page 4 undefined on input line 199
Latexmk: Summary of warnings:
  Latex failed to resolve 2 reference(s)
  Latex failed to resolve 37 citation(s)
Rule 'pdflatex': File changes, etc:
   Changed files, or newly in use since previous run(s):
      'paper.aux'
------------
Run number 2 of rule 'pdflatex'
------------
------------
Running 'pdflatex  -recorder  "paper.tex"'
------------
Latexmk: List of undefined refs and citations:
  Citation `7192723' on page 3 undefined on input line 86
  Citation `adios' on page 2 undefined on input line 83
  Citation `ascent' on page 2 undefined on input line 83
  Citation `aycock2003brief' on page 2 undefined on input line 65
  Citation `bezanson2012julia' on page 2 undefined on input line 65
  Citation `bezanson2017julia' on page 2 undefined on input line 65
  Citation `broderick2013streaming' on page 2 undefined on input line 41
  Citation `catalyst' on page 2 undefined on input line 83
  Citation `chen2016smartsim' on page 2 undefined on input line 83
  Citation `gabriel2004open' on page 4 undefined on input line 171
  Citation `gev_huang2016estimating' on page 3 undefined on input line 86
  Citation `gev_wang2017detection' on page 3 undefined on input line 86
  Citation `golaz2019doe' on page 1 undefined on input line 37
  Citation `golaz2019doe' on page 2 undefined on input line 59
  Citation `gropp1996user' on page 4 undefined on input line 171
  Citation `insitu_star' on page 2 undefined on input line 83
  Citation `insitu_terminology' on page 2 undefined on input line 83
  Citation `kelly2020chimbuko' on page 2 undefined on input line 83
  Citation `lattner2004llvm' on page 2 undefined on input line 65
  Citation `panda2013mvapich' on page 4 undefined on input line 171
  Citation `qian2018parametric' on page 2 undefined on input line 59
  Citation `rasch2019overview' on page 2 undefined on input line 59
  Citation `sensei_url' on page 2 undefined on input line 83
  Citation `ssw' on page 4 undefined on input line 197
  Citation `ssw_def' on page 4 undefined on input line 197
  Citation `ssw_isav' on page 3 undefined on input line 86
  Citation `ssw_survey' on page 3 undefined on input line 86
  Citation `thompson2018decline' on page 1 undefined on input line 34
  Citation `visit' on page 2 undefined on input line 83
  Citation `walker1996mpi' on page 1 undefined on input line 37
  Citation `wang2021tributarypca' on page 2 undefined on input line 41
  Citation `wang2021tributarypca' on page 3 undefined on input line 88
  Citation `xie2018understanding' on page 2 undefined on input line 59
  Citation `zhang2019evaluation' on page 2 undefined on input line 59
  Reference `ssw_algo' on page 4 undefined on input line 199
Latexmk: Summary of warnings:
  Latex failed to resolve 1 reference(s)
  Latex failed to resolve 37 citation(s)
Rule 'pdflatex': File changes, etc:
   Changed files, or newly in use since previous run(s):
      'paper.out'
------------
Run number 3 of rule 'pdflatex'
------------
------------
Running 'pdflatex  -recorder  "paper.tex"'
------------
Latexmk: List of undefined refs and citations:
  Citation `7192723' on page 3 undefined on input line 86
  Citation `adios' on page 2 undefined on input line 83
  Citation `ascent' on page 2 undefined on input line 83
  Citation `aycock2003brief' on page 2 undefined on input line 65
  Citation `bezanson2012julia' on page 2 undefined on input line 65
  Citation `bezanson2017julia' on page 2 undefined on input line 65
  Citation `broderick2013streaming' on page 2 undefined on input line 41
  Citation `catalyst' on page 2 undefined on input line 83
  Citation `chen2016smartsim' on page 2 undefined on input line 83
  Citation `gabriel2004open' on page 4 undefined on input line 171
  Citation `gev_huang2016estimating' on page 3 undefined on input line 86
  Citation `gev_wang2017detection' on page 3 undefined on input line 86
  Citation `golaz2019doe' on page 1 undefined on input line 37
  Citation `golaz2019doe' on page 2 undefined on input line 59
  Citation `gropp1996user' on page 4 undefined on input line 171
  Citation `insitu_star' on page 2 undefined on input line 83
  Citation `insitu_terminology' on page 2 undefined on input line 83
  Citation `kelly2020chimbuko' on page 2 undefined on input line 83
  Citation `lattner2004llvm' on page 2 undefined on input line 65
  Citation `panda2013mvapich' on page 4 undefined on input line 171
  Citation `qian2018parametric' on page 2 undefined on input line 59
  Citation `rasch2019overview' on page 2 undefined on input line 59
  Citation `sensei_url' on page 2 undefined on input line 83
  Citation `ssw' on page 4 undefined on input line 197
  Citation `ssw_def' on page 4 undefined on input line 197
  Citation `ssw_isav' on page 3 undefined on input line 86
  Citation `ssw_survey' on page 3 undefined on input line 86
  Citation `thompson2018decline' on page 1 undefined on input line 34
  Citation `visit' on page 2 undefined on input line 83
  Citation `walker1996mpi' on page 1 undefined on input line 37
  Citation `wang2021tributarypca' on page 2 undefined on input line 41
  Citation `wang2021tributarypca' on page 3 undefined on input line 88
  Citation `xie2018understanding' on page 2 undefined on input line 59
  Citation `zhang2019evaluation' on page 2 undefined on input line 59
  Reference `ssw_algo' on page 4 undefined on input line 199
Latexmk: Summary of warnings:
  Latex failed to resolve 1 reference(s)
  Latex failed to resolve 37 citation(s)
Failure to make 'paper.pdf'
Collected error summary (may duplicate other messages):
  pdflatex: Command for 'pdflatex' gave return code 1
      Refer to 'paper.log' for details
Looks like we failed to compile the PDF

[ltang85]

@whedon generate pdf

[whedon]

PDF failed to compile for issue #118 with the following error:

 Latexmk: This is Latexmk, John Collins, 17 Jan. 2018, version: 4.55.
Rule 'pdflatex': Rules & subrules not known to be previously run:
   pdflatex
Rule 'pdflatex': The following rules & subrules became out-of-date:
      'pdflatex'
------------
Run number 1 of rule 'pdflatex'
------------
------------
Running 'pdflatex  -recorder  "paper.tex"'
------------
===========Latexmk: Missing input file: 'ifoddpage.sty' from line
  '! LaTeX Error: File `ifoddpage.sty' not found.'
Latexmk: Missing input file: 'ifoddpage.sty' from line
  '! LaTeX Error: File `ifoddpage.sty' not found.'
Failure to make 'paper.pdf'
Collected error summary (may duplicate other messages):
  pdflatex: Command for 'pdflatex' gave return code 1
      Refer to 'paper.log' for details
Looks like we failed to compile the PDF

[ltang85]

@whedon generate pdf

[whedon]

:point_right::page_facing_up: Download article proof :page_facing_up: View article proof on GitHub :page_facing_up: :point_left:

[ltang85]

@whedon generate pdf

[whedon]

:point_right::page_facing_up: Download article proof :page_facing_up: View article proof on GitHub :page_facing_up: :point_left: