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KCL-BMEIS / niftyreg

This project contains command line tools to perform rigid, affine and non-linear registration of nifti or analyse images as well as utilities
BSD 3-Clause "New" or "Revised" License
141 stars 42 forks source link

make error on Mac M1 #90

Closed koegl closed 2 years ago

koegl commented 2 years ago

I'm trying to install NiftyReg on my Mac (M1Pro)

I successfully run this command: ccmake <niftyreg_source>

and then I run make - it reaches 71% and the there are a lot of errors:

[ 70%] Linking CXX static library lib_reg_femTransformation.a
[ 70%] Built target _reg_femTransformation
[ 71%] Building CXX object reg-lib/CMakeFiles/_reg_localTransformation.dir/_reg_localTransformation.cpp.o
In file included from /Users/fryderykkogl/Downloads/niftyreg_source/reg-lib/_reg_localTransformation.cpp:15:
In file included from /Users/fryderykkogl/Downloads/niftyreg_source/reg-lib/_reg_localTransformation.h:25:
In file included from /Library/Developer/CommandLineTools/usr/lib/clang/13.1.6/include/emmintrin.h:13:
In file included from /Library/Developer/CommandLineTools/usr/lib/clang/13.1.6/include/xmmintrin.h:13:
/Library/Developer/CommandLineTools/usr/lib/clang/13.1.6/include/mmintrin.h:33:5: error: use of undeclared identifier '__builtin_ia32_emms'; did you mean '__builtin_isless'?
    __builtin_ia32_emms();
    ^
/Library/Developer/CommandLineTools/SDKs/MacOSX12.3.sdk/usr/include/c++/v1/math.h:670:12: note: '__builtin_isless' declared here
    return isless(__lcpp_x, __lcpp_y);
           ^
/Library/Developer/CommandLineTools/SDKs/MacOSX12.3.sdk/usr/include/math.h:545:22: note: expanded from macro 'isless'
#define isless(x, y) __builtin_isless((x),(y))
                     ^
In file included from /Users/fryderykkogl/Downloads/niftyreg_source/reg-lib/_reg_localTransformation.cpp:15:
In file included from /Users/fryderykkogl/Downloads/niftyreg_source/reg-lib/_reg_localTransformation.h:25:
In file included from /Library/Developer/CommandLineTools/usr/lib/clang/13.1.6/include/emmintrin.h:13:
In file included from /Library/Developer/CommandLineTools/usr/lib/clang/13.1.6/include/xmmintrin.h:13:
/Library/Developer/CommandLineTools/usr/lib/clang/13.1.6/include/mmintrin.h:33:25: error: too few arguments to function call, expected 2, have 0
    __builtin_ia32_emms();
    ~~~~~~~~~~~~~~~~~~~~^
/Library/Developer/CommandLineTools/usr/lib/clang/13.1.6/include/mmintrin.h:50:19: error: use of undeclared identifier '__builtin_ia32_vec_init_v2si'
    return (__m64)__builtin_ia32_vec_init_v2si(__i, 0);
                  ^
/Library/Developer/CommandLineTools/usr/lib/clang/13.1.6/include/mmintrin.h:67:12: error: use of undeclared identifier '__builtin_ia32_vec_ext_v2si'
    return __builtin_ia32_vec_ext_v2si((__v2si)__m, 0);
           ^
/Library/Developer/CommandLineTools/usr/lib/clang/13.1.6/include/mmintrin.h:129:19: error: use of undeclared identifier '__builtin_ia32_packsswb'
    return (__m64)__builtin_ia32_packsswb((__v4hi)__m1, (__v4hi)__m2);
                  ^
/Library/Developer/CommandLineTools/usr/lib/clang/13.1.6/include/mmintrin.h:159:19: error: use of undeclared identifier '__builtin_ia32_packssdw'
    return (__m64)__builtin_ia32_packssdw((__v2si)__m1, (__v2si)__m2);
                  ^
/Library/Developer/CommandLineTools/usr/lib/clang/13.1.6/include/mmintrin.h:189:19: error: use of undeclared identifier '__builtin_ia32_packuswb'
    return (__m64)__builtin_ia32_packuswb((__v4hi)__m1, (__v4hi)__m2);
                  ^
/Library/Developer/CommandLineTools/usr/lib/clang/13.1.6/include/mmintrin.h:216:19: error: use of undeclared identifier '__builtin_ia32_punpckhbw'
    return (__m64)__builtin_ia32_punpckhbw((__v8qi)__m1, (__v8qi)__m2);
                  ^
/Library/Developer/CommandLineTools/usr/lib/clang/13.1.6/include/mmintrin.h:239:19: error: use of undeclared identifier '__builtin_ia32_punpckhwd'
    return (__m64)__builtin_ia32_punpckhwd((__v4hi)__m1, (__v4hi)__m2);
                  ^
/Library/Developer/CommandLineTools/usr/lib/clang/13.1.6/include/mmintrin.h:260:19: error: use of undeclared identifier '__builtin_ia32_punpckhdq'
    return (__m64)__builtin_ia32_punpckhdq((__v2si)__m1, (__v2si)__m2);
                  ^
/Library/Developer/CommandLineTools/usr/lib/clang/13.1.6/include/mmintrin.h:287:19: error: use of undeclared identifier '__builtin_ia32_punpcklbw'
    return (__m64)__builtin_ia32_punpcklbw((__v8qi)__m1, (__v8qi)__m2);
                  ^
/Library/Developer/CommandLineTools/usr/lib/clang/13.1.6/include/mmintrin.h:310:19: error: use of undeclared identifier '__builtin_ia32_punpcklwd'
    return (__m64)__builtin_ia32_punpcklwd((__v4hi)__m1, (__v4hi)__m2);
                  ^
/Library/Developer/CommandLineTools/usr/lib/clang/13.1.6/include/mmintrin.h:331:19: error: use of undeclared identifier '__builtin_ia32_punpckldq'
    return (__m64)__builtin_ia32_punpckldq((__v2si)__m1, (__v2si)__m2);
                  ^
/Library/Developer/CommandLineTools/usr/lib/clang/13.1.6/include/mmintrin.h:352:19: error: use of undeclared identifier '__builtin_ia32_paddb'; did you mean '__builtin_arm_addg'?
    return (__m64)__builtin_ia32_paddb((__v8qi)__m1, (__v8qi)__m2);
                  ^
/Library/Developer/CommandLineTools/usr/lib/clang/13.1.6/include/mmintrin.h:352:19: note: '__builtin_arm_addg' declared here
/Library/Developer/CommandLineTools/usr/lib/clang/13.1.6/include/mmintrin.h:352:19: error: first argument of MTE builtin function must be a pointer ('__v8qi' (vector of 8 'char' values) invalid)
    return (__m64)__builtin_ia32_paddb((__v8qi)__m1, (__v8qi)__m2);
                  ^                    ~~~~~~~~~~~~
/Library/Developer/CommandLineTools/usr/lib/clang/13.1.6/include/mmintrin.h:373:19: error: use of undeclared identifier '__builtin_ia32_paddw'; did you mean '__builtin_arm_addg'?
    return (__m64)__builtin_ia32_paddw((__v4hi)__m1, (__v4hi)__m2);
                  ^
/Library/Developer/CommandLineTools/usr/lib/clang/13.1.6/include/mmintrin.h:352:19: note: '__builtin_arm_addg' declared here
    return (__m64)__builtin_ia32_paddb((__v8qi)__m1, (__v8qi)__m2);
                  ^
/Library/Developer/CommandLineTools/usr/lib/clang/13.1.6/include/mmintrin.h:373:19: error: first argument of MTE builtin function must be a pointer ('__v4hi' (vector of 4 'short' values) invalid)
    return (__m64)__builtin_ia32_paddw((__v4hi)__m1, (__v4hi)__m2);
                  ^                    ~~~~~~~~~~~~
/Library/Developer/CommandLineTools/usr/lib/clang/13.1.6/include/mmintrin.h:394:19: error: use of undeclared identifier '__builtin_ia32_paddd'; did you mean '__builtin_arm_addg'?
    return (__m64)__builtin_ia32_paddd((__v2si)__m1, (__v2si)__m2);
                  ^
/Library/Developer/CommandLineTools/usr/lib/clang/13.1.6/include/mmintrin.h:352:19: note: '__builtin_arm_addg' declared here
    return (__m64)__builtin_ia32_paddb((__v8qi)__m1, (__v8qi)__m2);
                  ^
/Library/Developer/CommandLineTools/usr/lib/clang/13.1.6/include/mmintrin.h:394:19: error: first argument of MTE builtin function must be a pointer ('__v2si' (vector of 2 'int' values) invalid)
    return (__m64)__builtin_ia32_paddd((__v2si)__m1, (__v2si)__m2);
                  ^                    ~~~~~~~~~~~~
fatal error: too many errors emitted, stopping now [-ferror-limit=]
20 errors generated.
make[2]: *** [reg-lib/CMakeFiles/_reg_localTransformation.dir/_reg_localTransformation.cpp.o] Error 1
make[1]: *** [reg-lib/CMakeFiles/_reg_localTransformation.dir/all] Error 2
make: *** [all] Error 2
koegl commented 2 years ago

When I installed everything on a Rosetta terminal (explanation of how to set up a rosetta terminal) it worked