Speed up loading BpForms

KarrLab / bpforms

Toolkit for concretely describing non-canonical DNA, RNA, and proteins

https://www.bpforms.org

MIT License

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Speed up loading BpForms #83

Closed jonrkarr closed 5 years ago

jonrkarr commented 5 years ago

Change structures to method rather than attribute. This would enable pickling and reduce the startup time.
Cache reading from YAML

jonrkarr commented 5 years ago

Implemented strategy (2). The reading of SMILES into OpenBabel molecules seems to only be a small fraction of the runtime. Thus, this seemed unnecessary to optimize.

jonrkarr commented 5 years ago

Done