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KennthShang / PhaBOX

Local version of the virus identification and analysis web server (tool set)
https://phage.ee.cityu.edu.hk/
Academic Free License v3.0
37 stars 5 forks source link

PhaBox2 Conda Installation Error (+Solution) #43

Closed erfanshekarriz closed 1 week ago

erfanshekarriz commented 1 week ago

Dear JiaYu,

I wanted to report a small channel priority issue for conda installation of PhaBox2 that I've managed to fix. I would recommend updating your Wiki!

This installation works: 

conda create -n phabox2 phabox=2.1.5 -c conda-forge -c bioconda -y

This installation gives an error: 

conda create -n phabox2 phabox=2.1.5 -c bioconda -c conda-forge -y

The -c conda-forge repository needs to be set at top priority and -c bioconda as second priority. This wouldn't raise an error if conda config --set channel_priority flexible is set, but for me I always have my configuration on conda config --set channel_priority strict to make sure all environments are reproducible.

Final Solution, run:

conda config --add channels bioconda
conda config --add channels conda-forge
conda config --set channel_priority strict
conda create -n phabox2 phabox=2.1.5 -c conda-forge -c bioconda -y

Hope this helps! I wanted to post it here incase someone runs into a similar issue.

Best, Erfan

KennthShang commented 1 week ago

I see. Good to know.

I will revise the WIKI accordingly. Thanks.

Best, Jiayu