I am kind of lost how to deal with the results of ALRA.
When I process a Seurat object with ALRA I get a new assay. How do I then use the ALRA computed data to do a UMAP or TSNE reduction based on these data? Seems that whatever I do the result of both looks the same as the one produced by the standard pipeline after SCTransform.
I would greatly appreciate a jump start in this matter.
Dear all,
I am kind of lost how to deal with the results of ALRA. When I process a Seurat object with ALRA I get a new assay. How do I then use the ALRA computed data to do a UMAP or TSNE reduction based on these data? Seems that whatever I do the result of both looks the same as the one produced by the standard pipeline after SCTransform.
I would greatly appreciate a jump start in this matter.
Thanks and best, Matthias