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KosinskiLab / AlphaPulldownSnakemake

GNU General Public License v3.0
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Error #16

Closed salomonssonj closed 2 months ago

salomonssonj commented 2 months ago

Hi,

When I try to run this snakemake pipeline I got this error message:

KeyError in file https://raw.githubusercontent.com/KosinskiLab/AlphaPulldownSnakemake/main/workflow/Snakefile, line 291: 'compute_stats_arguments' File "/home/salomonssonj/AlphaPulldownSnakemake/workflow/Snakefile", line 19, in File "https://raw.githubusercontent.com/KosinskiLab/AlphaPulldownSnakemake/main/workflow/Snakefile", line 291, in

Is it possible to fix?

Kindly, Johannes

salomonssonj commented 2 months ago

Sorry, I saw that you made some changes. After updating my config.yaml file it now seem to work.

maurerv commented 2 months ago

Hi @salomonssonj ,

thanks for testing the pipeline and providing your feedback :)

I am glad your issue has been solved. For reference, this issue arose because snakedeploy would not honor the pipeline tag and instead use the latest snakefile in main.

Best, Valentin