Kurt-Hetrick / JHG_Clincal_Exome_Pipeline

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consider upgrading annotSV #19

Closed Kurt-Hetrick closed 2 years ago

Kurt-Hetrick commented 3 years ago

intergration of gnomAD SV is a desired feature. the install instructions seem to suggest that database integration is integral to the software install, as opposed to being able to install the software independently and point to a cached database instance externally, but that might not be the case. as it is, creating a software image with the databases contained within is not a viable long term solution. when ben did version 2.0, which is a pretty old version, the resulting container image size was 6 Gb.

Kurt-Hetrick commented 2 years ago

seems like this is not happening since emedgene is being used to handle this. no word on whether or not this needs to be ran at all.