Closed evanroyrees closed 2 years ago
nf-core lint
overall result: Passed :white_check_mark: :warning:Posted for pipeline commit 69b1d79
+| ✅ 62 tests passed |+
#| ❔ 34 tests were ignored |#
!| ❗ 9 tests had warnings |!
Merging #256 (69b1d79) into dev (869544b) will not change coverage. The diff coverage is
100.00%
.
@@ Coverage Diff @@
## dev #256 +/- ##
=======================================
Coverage 27.57% 27.57%
=======================================
Files 45 45
Lines 5345 5345
=======================================
Hits 1474 1474
Misses 3871 3871
Flag | Coverage Δ | |
---|---|---|
unittests | 27.57% <100.00%> (ø) |
Flags with carried forward coverage won't be shown. Click here to find out more.
Impacted Files | Coverage Δ | |
---|---|---|
autometa/common/metagenome.py | 94.30% <100.00%> (ø) |
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When using the
autometa-length-filter
entrypoint, if--output-fasta
is not specified with./metagenome.filtered.fna
(or to a separate directory), e.g.autometa-length-filter ... --output-fasta metagenome.filtered.fna
aFileNotFoundError
will occur. Getting the absolute path of the output specified prior to checking the output directory of the output specified will prevent this error.To check