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LTS5 / cmp_nipype

This repository is meant to host a beta version for the future release of the ConnectomeMapper.
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Rawdata - NIFTI #22

Closed MarcRamos closed 10 years ago

MarcRamos commented 10 years ago

Hi! Can I process images if I have nifti files as the rawdata? For example, I have T1 as nifti and DTI as dicom, it says that T1 morphological data is missing. I think that connectomemapper should accept NIFTIs as inputs. What is the difference?

Thanks, Marc.

davidrs06 commented 10 years ago

Yes, it's possible to start from NIFTI images. Just put them in the corresponding RAWDATA folder. The T1.nii image should go in /RAWDATA/T1 (this is the input folder, not the NIFTI folder) and the DTI dicom in RAWDATA/DTI.

CMP will copy single nifti files to the NIFTI folder, and convert dicom files to nifti as well.

MarcRamos commented 10 years ago

Thanks!

2014-01-30 davidrs06 notifications@github.com:

Yes, it's possible to start from NIFTI images. Just put them in the corresponding RAWDATA folder. The T1.nii image should go in /RAWDATA/T1 (this is the input folder, not the NIFTI folder) and the DTI dicom in RAWDATA/DTI.

CMP will copy single nifti files to the NIFTI folder, and convert dicom files to nifti as well.

Reply to this email directly or view it on GitHubhttps://github.com/LTS5/cmp_nipype/issues/22#issuecomment-33682594 .