LTS5 / cmp_nipype

This repository is meant to host a beta version for the future release of the ConnectomeMapper.
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Saving connetome as graphml #29

Open MarcRamos opened 10 years ago

MarcRamos commented 10 years ago

I think is not working correctly, I got an error.

140402-14:11:25,454 workflow ERROR: ['Node compute_matrice failed to run on host cloudn.'] 140402-14:11:25,454 workflow INFO: Saving crash info to /home/marc/nipype/crash-20140402-141125-marc-compute_matrice.npz 140402-14:11:25,455 workflow INFO: Traceback (most recent call last): File "/usr/local/lib/python2.7/dist-packages/nipype/pipeline/plugins/multiproc.py", line 15, in run_node result['result'] = node.run(updatehash=updatehash) File "/usr/local/lib/python2.7/dist-packages/nipype/pipeline/engine.py", line 1128, in run self._run_interface() File "/usr/local/lib/python2.7/dist-packages/nipype/pipeline/engine.py", line 1226, in _run_interface self._result = self._run_command(execute) File "/usr/local/lib/python2.7/dist-packages/nipype/pipeline/engine.py", line 1350, in _run_command result = self._interface.run() File "/usr/local/lib/python2.7/dist-packages/nipype/interfaces/base.py", line 823, in run runtime = self._run_interface(runtime) File "/usr/local/lib/python2.7/dist-packages/cmp/stages/connectome/connectome.py", line 77, in _run_interface additional_maps=additional_maps,output_types=self.inputs.output_types) File "/usr/local/lib/python2.7/dist-packages/cmtklib/connectome.py", line 485, in cmat 'dn_hemisphere':d_gml['dn_hemisphere'], KeyError: 'dn_hemisphere\nInterface CMTK_cmat failed to run.