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LinkageIO / Camoco

Camoco is a fully-fledged software package for building co-expression networks and analyzing the overlap interactions among genes.
MIT License
41 stars 32 forks source link

Integrate Coveralls.io #72

Closed fuzzmz closed 7 years ago

fuzzmz commented 7 years ago

This should be the only change required in the build config in order to publish the coverage report to Coveralls.io. Other than this you should just go to coveralls.io and enable code coverage for this repo.

Tried to test it, but Travis-CI builds were failing for me, so I added an after_failure step with coveralls publishing just to see if the API works, and it seems to be ok (see here).

I say seems to be ok because it gives 0% coverage, but I'm not sure that's because of the failing tests or not. Any idea on this, or on how to better test it?

Fixes #72

schae234 commented 7 years ago

Hi @fuzzmz

Tests are failing due to a different bug (the test suite generates some random datasets that sometimes don), so don't worry about that right now!

Ill merge this and see if I can get the badge working! Thanks!

fuzzmz commented 7 years ago

As it is now the Travis-CI job won't publish to Coveralls.io because it's under a after_success step which won't get executed due to the failing tests. I can update this to have it always publish to Coveralls no matter if the build fails or not if you'd like.

coveralls commented 7 years ago

Coverage Status

Changes Unknown when pulling 916e1045a1b4b37c47517cf204d4a4ec019bfd8c on fuzzmz:integrate-coveralls into on schae234:dev.

schae234 commented 7 years ago

Looks like just adding a line to change into the testing directory fixed the issue of correctly calculating the line coverage.

Nice work!

fuzzmz commented 7 years ago

D'oh! Glad you got it working.

On Oct 16, 2017 21:53, "Rob Schaefer" notifications@github.com wrote:

Looks like just adding a line to change into the testing directory https://github.com/schae234/Camoco/blob/3adc6203254e417965c1add532be95c1e9edd4c7/.travis.yml#L40 fixed the issue of correctly calculating the line coverage.

Nice work!

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