Add typers and tests - Githubissues

MDU-PHL / bohra

A pipeline for bioinformatics analysis of bacterial genomes

GNU General Public License v3.0

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Closed kristyhoran closed 1 year ago

kristyhoran commented 1 year ago

have added typers
added in test data
updated circleci (still more to do in upcoming pull request)
Added in babykraken (thanks @Wytamma ) into download script as an option for users
downgraded vanilla spades at suggestion of danielle and sarah b.. left shovill_spades as is.
added in spades_args for users who want to use vanilla spades and custom options

kristyhoran commented 1 year ago

@stroehleina are you happy to approve this so i can make a release and push to pypi? and conda?

kristyhoran commented 1 year ago

Thanks @abcdtree and @stroehleina