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MDU-PHL / ngmaster

In silico multi-antigen sequence typing for Neisseria gonorrhoeae (NG-MAST)
GNU General Public License v3.0
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Remove (or document) BLAST dependency #7

Closed tseemann closed 8 years ago

tseemann commented 8 years ago

It seems BLAST is used only to check for an exact allele match?

This can be done with a dictionary lookup.

There is risk BLAST will do local alignment only and still get 100% match at 0.001 evalue!

kwongj commented 8 years ago

Closed #7.