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MHH-RCUG / nf_wochenende

A nextflow version of the Wochenende reference metagenome binning and visualization pipeline
MIT License
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multiqc #75

Open LisaHollstein opened 2 years ago

LisaHollstein commented 2 years ago

@colindaven

The multiqc process is not working right now, because

  1. the input wochenende.out.collect doesn't work, since we have to clarify wich wochenende output we need
  2. it uses another conda env, that I do not have and I do not know where to get it
colindaven commented 2 years ago

Yes, I know, it's not complete. It needs to be redesigned, and needs a whole lot of input. Perhaps it's best as part of the wochenende process or as part of a bam_stats process. It's not critical though.