LennartPhil
commented
6 months ago I got it to work after redownloading Rosetta 2, uninstalling numpy using pip uninstall numpy and then downloading numpy for arm64 using arch -arm64 pip install numpy.
Thus I'm closing the issue and apologise for the inconvenience
I'm currently trying to run the application on an M3Pro processor, unfortunately I'm only getting the following error messages.
Regular usage:
hd-bet -i /Users/XXXXXXXXX/Desktop/01005097/01005097_T1.nii.gz -o /Users/XXXXXXXXX/Desktop/01005097/01005097_T1_brainextracted.nii.gzOutput:
Original error was: dlopen(/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/numpy/core/_multiarray_umath.cpython-311-darwin.so, 0x0002): tried: '/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/numpy/core/_multiarray_umath.cpython-311-darwin.so' (mach-o file, but is an incompatible architecture (have 'x86_64', need 'arm64')), '/System/Volumes/Preboot/Cryptexes/OS/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/numpy/core/_multiarray_umath.cpython-311-darwin.so' (no such file), '/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/numpy/core/_multiarray_umath.cpython-311-darwin.so' (mach-o file, but is an incompatible architecture (have 'x86_64', need 'arm64'))Using CPU-mode only:
hd-bet -i /Users/XXXXXXXXX/Desktop/01005097/01005097_T1.nii.gz -o /Users/XXXXXXXXX/Desktop/01005097/01005097_T1_brainextracted.nii.gz -device cpu -mode fast -tta 0Output:
Original error was: dlopen(/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/numpy/core/_multiarray_umath.cpython-311-darwin.so, 0x0002): tried: '/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/numpy/core/_multiarray_umath.cpython-311-darwin.so' (mach-o file, but is an incompatible architecture (have 'x86_64', need 'arm64')), '/System/Volumes/Preboot/Cryptexes/OS/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/numpy/core/_multiarray_umath.cpython-311-darwin.so' (no such file), '/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/numpy/core/_multiarray_umath.cpython-311-darwin.so' (mach-o file, but is an incompatible architecture (have 'x86_64', need 'arm64'))Both error massages are a bit longer, as another exception occurred during the handling of the first exception.
Has anyone found a solution to this problem?
Oddly enough, I have also installed the HD-BET extension for Slicer, where it seems to work as expected.