search

MIC-DKFZ / LIDC-IDRI-processing

Scripts for the preprocessing of LIDC-IDRI data
MIT License
76 stars 18 forks source link

path_charactetistics fail #15

Open Andreasommer97 opened 4 years ago

Andreasommer97 commented 4 years ago

I have the following error when I execute the code:

File "D:/Escritorio/ANDREA_TFM/CODIGO1_PRUEBA/lidc_data_to_nifti.py", line 371 global path_to_characteristics ^ SyntaxError: name 'path_to_characteristics' is assigned to before global declaration

My paths:

Path to the command lines tools of MITK Phenotyping

path_to_executables=r"D:\Documentos\MITK 2016.11.99_rcadabe\bin"

Path to the folder that contains the LIDC-IDRI DICOM files

path_to_dicoms = r"D:\Escritorio\ANDREA_TFM\LIDC-IDRI"

Path to the folder that contains the LIDC-IDRI XML files

path_to_xmls= r"D:\Escritorio\ANDREA_TFM\tcia-lidc-xml"

path_to_xmls= r"P:\Goetz\Datenkollektive\Lungendaten\Nodules_LIDC_IDRI\XML2"

Output path where the generated NRRD and NIFTI files will be saved

path_to_nrrds = r"D:\Escritorio\ANDREA_TFM\CODIGO1_PRUEBA"

Output path where the genreated Planar Figures will be saved

path_to_planars= r"D:\Escritorio\ANDREA_TFM\CODIGO1_PRUEBA"

Output path to the CSV-file that will contain the nodule characteristics. An existing will be appended

path_to_characteristics=r"D:\Escritorio\ANDREA_TFM\CODIGO1_PRUEBA\characteristics_2.csv"

Ouput path to an error file where errors will be logged. An existing file will be appended.

path_to_error_file=r"D:\Escritorio\ANDREA_TFM\CODIGO1_PRUEBA\conversion_error_2.txt"

Could someone help me with this?