hello
I am new to use TractSeg (version: master) via docker. I met an error reporting “No tracking found for bundle CC_1( and all 72 fibers). returning zeros". any suggestions are well appreciated! My diffusion data belongs to single shell data( 1 b=0 and 64 b=1000). below is the error and my code
Thank you!
The code for TractSeg that I am running via docker is:
sudo docker run -v /home/suming/Desktop/data/DMD/TractSeg/DMD25:/data -t wasserth/tractseg_container:master Tractometry -i /data/ToM_trackings/ -o /data/FA_tractometry.csv -e /data/endings_segmentations -s /data/sub-DMD25-space-reorient_desc-preproc_FA.nii.gz --tracking_format trk
the error reports:
/usr/local/lib/python3.7/site-packages/pandas/compat/init.py:124: UserWarning: Could not import the lzma module. Your installed Python is incomplete. Attempting to use lzma compression will result in a RuntimeError.
warnings.warn(msg)
0%| | 0/50 [00:00<?, ?it/s]WARNING: No tracking found for bundle AF_left. Returning zeros.
WARNING: No tracking found for bundle AF_right. Returning zeros.
WARNING: No tracking found for bundle ATR_left. Returning zeros.
WARNING: No tracking found for bundle ATR_right. Returning zeros.
WARNING: No tracking found for bundle CC_1. Returning zeros.
WARNING: No tracking found for bundle CC_2. Returning zeros.
WARNING: No tracking found for bundle CC_3. Returning zeros.
WARNING: No tracking found for bundle CC_4. Returning zeros.
WARNING: No tracking found for bundle CC_5. Returning zeros.
WARNING: No tracking found for bundle CC_6. Returning zeros.
WARNING: No tracking found for bundle CC_7. Returning zeros.
WARNING: No tracking found for bundle CG_left. Returning zeros.
WARNING: No tracking found for bundle CG_right. Returning zeros.
WARNING: No tracking found for bundle CST_left. Returning zeros.
WARNING: No tracking found for bundle CST_right. Returning zeros.
WARNING: No tracking found for bundle FPT_left. Returning zeros.
WARNING: No tracking found for bundle FPT_right. Returning zeros.
WARNING: No tracking found for bundle ICP_left. Returning zeros.
WARNING: No tracking found for bundle ICP_right. Returning zeros.
WARNING: No tracking found for bundle IFO_left. Returning zeros.
WARNING: No tracking found for bundle IFO_right. Returning zeros.
WARNING: No tracking found for bundle ILF_left. Returning zeros.
WARNING: No tracking found for bundle ILF_right. Returning zeros.
WARNING: No tracking found for bundle MCP. Returning zeros.
WARNING: No tracking found for bundle OR_left. Returning zeros.
WARNING: No tracking found for bundle OR_right. Returning zeros.
WARNING: No tracking found for bundle POPT_left. Returning zeros.
WARNING: No tracking found for bundle POPT_right. Returning zeros.
WARNING: No tracking found for bundle SCP_left. Returning zeros.
WARNING: No tracking found for bundle SCP_right. Returning zeros.
WARNING: No tracking found for bundle SLF_I_left. Returning zeros.
WARNING: No tracking found for bundle SLF_I_right. Returning zeros.
WARNING: No tracking found for bundle SLF_II_left. Returning zeros.
WARNING: No tracking found for bundle SLF_II_right. Returning zeros.
WARNING: No tracking found for bundle SLF_III_left. Returning zeros.
WARNING: No tracking found for bundle SLF_III_right. Returning zeros.
WARNING: No tracking found for bundle STR_left. Returning zeros.
WARNING: No tracking found for bundle STR_right. Returning zeros.
WARNING: No tracking found for bundle UF_left. Returning zeros.
WARNING: No tracking found for bundle UF_right. Returning zeros.
WARNING: No tracking found for bundle T_PREM_left. Returning zeros.
WARNING: No tracking found for bundle T_PREM_right. Returning zeros.
WARNING: No tracking found for bundle T_PAR_left. Returning zeros.
WARNING: No tracking found for bundle T_PAR_right. Returning zeros.
WARNING: No tracking found for bundle T_OCC_left. Returning zeros.
WARNING: No tracking found for bundle T_OCC_right. Returning zeros.
WARNING: No tracking found for bundle ST_FO_left. Returning zeros.
WARNING: No tracking found for bundle ST_FO_right. Returning zeros.
WARNING: No tracking found for bundle ST_PREM_left. Returning zeros.
WARNING: No tracking found for bundle ST_PREM_right. Returning zeros.
100%|█████████████████████████████████████████| 50/50 [00:00<00:00, 1679.80it/s]
hello I am new to use TractSeg (version: master) via docker. I met an error reporting “No tracking found for bundle CC_1( and all 72 fibers). returning zeros". any suggestions are well appreciated! My diffusion data belongs to single shell data( 1 b=0 and 64 b=1000). below is the error and my code Thank you!
The code for TractSeg that I am running via docker is: sudo docker run -v /home/suming/Desktop/data/DMD/TractSeg/DMD25:/data -t wasserth/tractseg_container:master Tractometry -i /data/ToM_trackings/ -o /data/FA_tractometry.csv -e /data/endings_segmentations -s /data/sub-DMD25-space-reorient_desc-preproc_FA.nii.gz --tracking_format trk
the error reports: /usr/local/lib/python3.7/site-packages/pandas/compat/init.py:124: UserWarning: Could not import the lzma module. Your installed Python is incomplete. Attempting to use lzma compression will result in a RuntimeError. warnings.warn(msg) 0%| | 0/50 [00:00<?, ?it/s]WARNING: No tracking found for bundle AF_left. Returning zeros. WARNING: No tracking found for bundle AF_right. Returning zeros. WARNING: No tracking found for bundle ATR_left. Returning zeros. WARNING: No tracking found for bundle ATR_right. Returning zeros. WARNING: No tracking found for bundle CC_1. Returning zeros. WARNING: No tracking found for bundle CC_2. Returning zeros. WARNING: No tracking found for bundle CC_3. Returning zeros. WARNING: No tracking found for bundle CC_4. Returning zeros. WARNING: No tracking found for bundle CC_5. Returning zeros. WARNING: No tracking found for bundle CC_6. Returning zeros. WARNING: No tracking found for bundle CC_7. Returning zeros. WARNING: No tracking found for bundle CG_left. Returning zeros. WARNING: No tracking found for bundle CG_right. Returning zeros. WARNING: No tracking found for bundle CST_left. Returning zeros. WARNING: No tracking found for bundle CST_right. Returning zeros. WARNING: No tracking found for bundle FPT_left. Returning zeros. WARNING: No tracking found for bundle FPT_right. Returning zeros. WARNING: No tracking found for bundle ICP_left. Returning zeros. WARNING: No tracking found for bundle ICP_right. Returning zeros. WARNING: No tracking found for bundle IFO_left. Returning zeros. WARNING: No tracking found for bundle IFO_right. Returning zeros. WARNING: No tracking found for bundle ILF_left. Returning zeros. WARNING: No tracking found for bundle ILF_right. Returning zeros. WARNING: No tracking found for bundle MCP. Returning zeros. WARNING: No tracking found for bundle OR_left. Returning zeros. WARNING: No tracking found for bundle OR_right. Returning zeros. WARNING: No tracking found for bundle POPT_left. Returning zeros. WARNING: No tracking found for bundle POPT_right. Returning zeros. WARNING: No tracking found for bundle SCP_left. Returning zeros. WARNING: No tracking found for bundle SCP_right. Returning zeros. WARNING: No tracking found for bundle SLF_I_left. Returning zeros. WARNING: No tracking found for bundle SLF_I_right. Returning zeros. WARNING: No tracking found for bundle SLF_II_left. Returning zeros. WARNING: No tracking found for bundle SLF_II_right. Returning zeros. WARNING: No tracking found for bundle SLF_III_left. Returning zeros. WARNING: No tracking found for bundle SLF_III_right. Returning zeros. WARNING: No tracking found for bundle STR_left. Returning zeros. WARNING: No tracking found for bundle STR_right. Returning zeros. WARNING: No tracking found for bundle UF_left. Returning zeros. WARNING: No tracking found for bundle UF_right. Returning zeros. WARNING: No tracking found for bundle T_PREM_left. Returning zeros. WARNING: No tracking found for bundle T_PREM_right. Returning zeros. WARNING: No tracking found for bundle T_PAR_left. Returning zeros. WARNING: No tracking found for bundle T_PAR_right. Returning zeros. WARNING: No tracking found for bundle T_OCC_left. Returning zeros. WARNING: No tracking found for bundle T_OCC_right. Returning zeros. WARNING: No tracking found for bundle ST_FO_left. Returning zeros. WARNING: No tracking found for bundle ST_FO_right. Returning zeros. WARNING: No tracking found for bundle ST_PREM_left. Returning zeros. WARNING: No tracking found for bundle ST_PREM_right. Returning zeros. 100%|█████████████████████████████████████████| 50/50 [00:00<00:00, 1679.80it/s]