Hard-coded absolute path in loadTables.R

MIT-LCP / mimic-omop

Mapping the MIMIC-III database to the OMOP schema

MIT License

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Hard-coded absolute path in loadTables.R #46

Closed smondet closed 6 years ago

smondet commented 6 years ago

See https://github.com/MIT-LCP/mimic-omop/blob/master/etl/ConceptTables/loadTables.R#L50

With the absolute path, the script silently does not load the CSVs, and then etl.sql fails on a missing table: gcpt_note_section_to_concept (Cf. #40 )

parisni commented 6 years ago

Thanks for your feedback !