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MariaNattestad / Ribbon

A genome browser designed for complex structural variants and long reads.
https://genomeribbon.com
MIT License
271 stars 29 forks source link

visualize complex structural variants #86

Closed ywzhang071394 closed 3 months ago

ywzhang071394 commented 3 months ago

Hi,

Thank you for the nice tool. I am planning to use Ribbon to visualize a complex varaint across chr1,3,5. The bedpe file was uploaded. However, I cannot find any botton to simutanously choose multiple rows to visualize the complex SVs. Could you point out the setting? Thank you!

ywzhang071394 commented 3 months ago

Also, is that possible to show haplotags in Ribbon?

MariaNattestad commented 3 months ago

If you load just one variant, it should pull in the other regions if any read alignments from the chosen variant also aligns across the other variants. If no reads are spanning that far, then you would just have to visualize them separately. But I'll consider making it possible to select multiple loci explicitly because that's a good idea! For haplotags, yes that's on my list. Should be done soon!

ywzhang071394 commented 3 months ago

Thank you, Maria! Looking forward to the new features at next version!