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MarioniLab
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miloDE
Framework for sensitive DE testing (using neighbourhoods)
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Got errors when running tutorial, "error in evaluating the argument 'x' in selecting a method for function 'as.matrix': no slot of name "data" for this object of class "Assay5""
#41
RongqinChen
opened
1 month ago
1
Installation failed. version of Rlang and/or miloR?
#40
RongqinChen
opened
1 month ago
4
Milo-object check in assign_neighborhood misses milo-objects
#39
MaximilianNuber
closed
1 month ago
2
How to specify contrasts?
#38
liz-is
opened
5 months ago
1
Slow plotting because of .check_sce_milo
#37
mihem
closed
4 months ago
6
Number of tested neighbourhoods and other parameters
#36
Thapeachydude
closed
5 months ago
3
DE in the presence of DA
#35
gdagstn
closed
5 months ago
3
Number of specific DE genes higher than number of DE genes?
#34
mihem
closed
5 months ago
11
Problem with get-wgcna_modules
#33
HeleneHemmer
closed
6 months ago
10
edge_width cannot be changed in plot_milo_by_single_metric
#32
mihem
closed
7 months ago
1
Certain values of k cause estimate_neighbourhood_sizes() to freeze
#31
Budjavac
closed
7 months ago
2
P-value correction error: wrong args for environment subassignment with parallel job failure
#30
RussBainer
closed
1 year ago
4
Interoperability with Seurat and comparison with traditional (clustered) DE analysis
#29
learning-MD
closed
1 year ago
19
using de_stat with wgcna in Vignette
#28
alwhiteh
closed
1 year ago
2
Runtime for p-value correction across neighbourhoods
#27
Biomiha
closed
1 year ago
3
Error while running the calc_AUC_per_neighbourhood() function
#26
aditisk
closed
7 months ago
36
Small fixes to documentation of main functions
#25
emdann
closed
1 year ago
0
Minor comments on the vignette
#24
emdann
closed
1 year ago
1
Fixes in README
#23
emdann
closed
1 year ago
0
Minor installation issues
#22
emdann
closed
1 year ago
1
Augur dependency
#21
emdann
closed
1 year ago
3
Rendering vignette to view from README
#20
emdann
closed
1 year ago
2
Code review
#19
MikeDMorgan
closed
1 year ago
3
update namespace
#18
amissarova
closed
1 year ago
0
Estimate hood size
#17
amissarova
closed
1 year ago
0
add check that k_init < k for graph rebuild
#16
amissarova
closed
2 years ago
0
add examples
#15
amissarova
closed
2 years ago
0
add examples
#14
amissarova
closed
2 years ago
0
add standard insides
#13
amissarova
closed
2 years ago
0
add examples
#12
amissarova
closed
2 years ago
0
add manual
#11
amissarova
closed
2 years ago
0
add exmaple
#10
amissarova
closed
2 years ago
0
add example
#9
amissarova
closed
2 years ago
0
add example
#8
amissarova
closed
2 years ago
0
adding checks whether sce is already milo and contains graph
#7
amissarova
closed
2 years ago
0
adding which data to work w
#6
amissarova
closed
2 years ago
0
update namespace
#5
amissarova
closed
2 years ago
0
added some verbosing
#4
amissarova
closed
2 years ago
0
Remove buildGraph step from assign_nhoods
#3
emdann
closed
2 years ago
3
Write quick-start example for miloDE testing
#2
emdann
closed
2 years ago
1
new task
#1
emdann
closed
2 years ago
0