Closed mfansler closed 6 months ago
In cases of reanalyzing published data, it may be preferable to filter to only annotated cells. This could be especially helpful in large datasets that may already exclude cells for poor QC metrics.
There's a TODO note here:
https://github.com/Mayrlab/scUTRquant/blob/e793dcbce24adad832bca42901b11cd9bd66ebe9/scripts/mtxs_to_sce_txs.R#L115-L131
In cases of reanalyzing published data, it may be preferable to filter to only annotated cells. This could be especially helpful in large datasets that may already exclude cells for poor QC metrics.
There's a TODO note here:
https://github.com/Mayrlab/scUTRquant/blob/e793dcbce24adad832bca42901b11cd9bd66ebe9/scripts/mtxs_to_sce_txs.R#L115-L131