Export Option: AnnData - Githubissues

Mayrlab / scUTRquant

Bioinformatics pipeline for single-cell 3' UTR isoform quantification

https://Mayrlab.github.io/scUTRquant

GNU General Public License v3.0

14 stars 3 forks source link

Export Option: AnnData #63

Closed mfansler closed 1 month ago

mfansler commented 11 months ago

Rather than exporting to SingleCellExperiment, more Pythonic users might prefer scanpy for downstream analysis, and so want an AnnData formatted object.

This could be added as an option.

abuchin commented 10 months ago

Looking forward to it!