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MedVisBonn / eyepy

A python package to read, analyse and visualize OCT and fundus data from various sources.
https://medvisbonn.github.io/eyepy/
MIT License
45 stars 8 forks source link

Exporting data #15

Open msseibel opened 1 year ago

msseibel commented 1 year ago

Hello together,

thank you for your repository. It seems to work well for extracting .vol data.

We plan to export our data to another file format such as Nifti, Dicom or raw/mhd. Are you aware of functions to convert EyeVolume data into another format?

Oli4 commented 1 year ago

Hi @msseibel and welcome to eyepy,

currently there is no function to directly write the data to Nifti, Dicom or raw/mhd, but I am happy to assist you if you want to contribute such functionality which should be straight forward, especially if you are familiar with the respective format.

Best Olivier

Oli4 commented 1 year ago

OCT-Converter just added a module to write DICOM data. Currently, it only supports Topcon data. But this seems a good place to start from when implementing a DICOM writer for the EyeVolume object.

marksgraham commented 1 year ago

There is actually a plan to expand to DICOM export for .e2e data, too, but not sure when that will be ready.