Issue for install this software

[xtmgah]

Hello:

I am try to install this software under R. Thanks for developing this. It's pretty good software for analysis Kataegis. I have the following issue to install, Can you help to fix this? Thanks.

install_github("MeichunCai/KataegisPortal") Downloading GitHub repo MeichunCai/KataegisPortal@master from URL https://api.github.com/repos/MeichunCai/KataegisPortal/zipball/master Installing KataegisPortal '/Library/Frameworks/R.framework/Resources/bin/R' --no-site-file --no-environ --no-save --no-restore --quiet CMD INSTALL \ '/private/var/folders/_0/yvrx0nkx76nfvz85q1dxg27183vg3m/T/RtmpgYZibi/devtools1dd2539e8912/MeichunCai-KataegisPortal-7489603' --library='/Library/Frameworks/R.framework/Versions/3.5/Resources/library' --install-tests

• installing source package ‘KataegisPortal’ ... R data inst byte-compile and prepare package for lazy loading ** help Warning: /private/var/folders/_0/yvrx0nkx76nfvz85q1dxg27183vg3m/T/RtmpgYZibi/devtools1dd2539e8912/MeichunCai-KataegisPortal-7489603/man/KataegisPortal.Rd:6: unknown macro '\Detection' Warning: /private/var/folders/_0/yvrx0nkx76nfvz85q1dxg27183vg3m/T/RtmpgYZibi/devtools1dd2539e8912/MeichunCai-KataegisPortal-7489603/man/KataegisPortal.Rd:9: unknown macro '\KataegisPortal' Warning: /private/var/folders/_0/yvrx0nkx76nfvz85q1dxg27183vg3m/T/RtmpgYZibi/devtools1dd2539e8912/MeichunCai-KataegisPortal-7489603/man/KataegisPortal.Rd:21: unknown macro '\Mei' * installing help indices building package indices Error in read.table(zfile, header = TRUE, as.is = FALSE) : more columns than column names ERROR: installing package indices failed
• removing ‘/Library/Frameworks/R.framework/Versions/3.5/Resources/library/KataegisPortal’ Installation failed: Command failed (1)

[sigven]

Hi,

I am encountering the same error as @xtmgah. This tools looks really useful for kataegis analysis, would be great if you are able to fix the installation procedure!

thanks, Sigve

[Al3n70rn]

Hi,

The problem can be solved by editing the KataegisPortal.Rd file.

You have to download the package from GitHub (i.e. git clone ...). Then, you need to delete the '\' signs that are included after '{'. Then you can build again the package by doing R CMB build KataegisPortal-master. This will create this file KataegisPortal_1.0.3.tar.gz and you can install normally with R. I have included the .tar.gz KataegisPortal_1.0.3.tar.gz file to make it easier.

Best regards, A

[yukaiopen]

Hi,

The problem can be solved by editing the KataegisPortal.Rd file.

You have to download the package from GitHub (i.e. git clone ...). Then, you need to delete the '' signs that are included after '{'. Then you can build again the package by doing R CMB build KataegisPortal-master. This will create this file KataegisPortal_1.0.3.tar.gz and you can install normally with R. I have included the .tar.gz KataegisPortal_1.0.3.tar.gz file to make it easier.

Best regards, A

Hi A， Thanks for your file. But I noticed that there was a mistake in your KataegisPortal.Rd. In Line 21, there was an unnecessary "\" before "mei". It should be removed manually.

Hope this will help others. (Hope my friend will not ask me to help again during my lovely night LOL) Yukai Here was my edited file for everyone. KataegisPortal_1.0.3.tar.gz