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MicroB3-IS / osd-analysis

Repository for all Ocean Sampling Day related source code with information on how-to acquire OSD data
Apache License 2.0
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Provide 93% quality-filetered taoxnomy for MED exports #20

Closed ikostadi closed 9 years ago

ikostadi commented 9 years ago

The taxonomy in the header of the MED-formatted FASTA exports for LGC 16S/18S is not quality-filtered. The default quality value used by SILVAngs to assign taxonomy is 93% (see #5 and SILVAngs analysis report in one of the results folders, e.g. here)

ikostadi commented 9 years ago

Now available in the respective folders for all three datasets (LGC 16S, LGC 18S, Australia 16S). Will be included in the Lifewatch analysis results as well.

ikostadi commented 9 years ago

quality value=(% sequence identity + % alignment coverage)/2