AMR++ is a bioinformatic pipeline meant to aid in the analysis of raw sequencing reads to characterize the profile of antimicrobial resistance genes, or resistome.
Apptainer is the open source flavour of singularity, it is compatible with singularity .sif files and is supported by Nextflow with the same parameters as singularity.
Apptainer is the open source flavour of singularity, it is compatible with singularity .sif files and is supported by Nextflow with the same parameters as singularity.
https://www.nextflow.io/docs/latest/container.html
This pull request has adds the config files for apptainer and updates the documents to reflect this.
Users should be able to use the flag
-profile apptainerin the same way they can for singularity and conda.Has been verified using the default demo data.