MissionBio / mosaic

Tertiary analysis package to visualize single-cell data generated by the Tapestri Platform.
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Guide to install Mosaic #12

Closed mdbabumiamssm closed 1 year ago

mdbabumiamssm commented 1 year ago

For some strange reason, conda link ( https://anaconda.org/missionbio/missionbio.mosaic ) didn't work for me. After several repetitive effort, I gave up ! The i started installing by creating new environment. Follow the images for details. Also, You need to specify the version of Mosaic, otherwise it doesn't install . I used Anaconda3 environment on this purpose. Feel free text me if any trouble comes.

tapestri installation 4

tapestri installation 1 tapestri installation 2 tapestri installation 3

KKJSP commented 1 year ago

Mosaic should now be installed using installers - https://missionbio.github.io/mosaic/pages/install.html#installer-preferred

Feel free to create a new ticket if there are any issues.

mdbabumiamssm commented 1 year ago

@KKJSP I have tried installing using suggested installer ; Unfortunately, it only created new mosaic conda environment in windows, didn't install missionbio... Also, can you make linux installation instructions separate and more specific ? Thanks

KKJSP commented 1 year ago

@mdbabumiamssm for now it only creates an environment from which the notebooks can be launched. There isn't a separate GUI available for mosaic.

For linux, just running the shell script using bash <path to installer> is sufficient to create the new environment.