Mohinta2892 / catena

Neuron Segmentation, Synaptic Partner Detection and Microtubule tracking for vEM with EM-2-EM translation. Codebase built upon Funke lab's algorithms.
7 stars 1 forks source link

neuroglancer yaml is not working #27

Open Mohinta2892 opened 2 months ago

Mohinta2892 commented 2 months ago

conda environments on mac and linux does not work. Needs fixing.

Mohinta2892 commented 2 months ago

You can currently do it by hand:

conda create -n nglancer python=3.10
conda activate nglancer            
pip install neuroglancer==2.37
pip install zarr
pip install h5py
pip install dask
pip install https://github.com/funkelab/funlib.persistence.git
pip install  git+https://github.com/funkelab/funlib.persistence.git
pip show argparse
pip install argparse
pip install tifffile
pip install funlib.persistence==0.4.0
pip install numpy==1.26.4